View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_high_18 (Length: 310)
Name: NF1401_high_18
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 35909128 - 35908983
Alignment:
| Q |
96 |
tcctagttcaccatcaaattaattggttctaagcatgatccatgttt-------acttccatgaaatgaatgcactttgttcaaagtctactagttagat |
188 |
Q |
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| T |
35909128 |
tcctagttcaccatcaaattaattggttctaagcatgatccttgtttcaaatttacttccatgaaataaatgcactttgtgcaaaatctactagttagat |
35909029 |
T |
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| Q |
189 |
tgtaataataaaagaattagtttgaactttcaattaaaaagttttgtt |
236 |
Q |
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| T |
35909028 |
tgtaat-attaaagaattagtttgaactttcactt-aaaagttttgtt |
35908983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 35913529 - 35913392
Alignment:
| Q |
92 |
tgcctcctagttcaccatcaaattaattggttctaagcatgatccatgttt-------acttccatgaaatgaatgcactttgttcaaagtctactagtt |
184 |
Q |
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| T |
35913529 |
tgcctcctgcttcaccatcaaattaaagggttctgagcatgatcaatgtttcaaatttacttccttgaaatg----cactctgtgcataatctactagtt |
35913434 |
T |
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| Q |
185 |
agattgtaataataaaagaattagtttgaactttcaattaaa |
226 |
Q |
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| T |
35913433 |
agattgtaataaaaaaaaaattagtttgaactttcaattaaa |
35913392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 35926430 - 35926362
Alignment:
| Q |
157 |
aatgcactttgttcaaagtctactagttagattgtaataataaaagaattagtttgaactttcaattaaa |
226 |
Q |
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| T |
35926430 |
aatgcactttgtgcaaaatctactagttagattgtaataa-acaaaattcagtttgaactttcaactaaa |
35926362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 21285257 - 21285308
Alignment:
| Q |
182 |
gttagattgtaataataaaagaattagtttgaactttcaattaaaaagtttt |
233 |
Q |
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| T |
21285257 |
gttagattgtaataataaaagaattagtttgaactttcaattaaaaagtttt |
21285308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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