View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_high_26 (Length: 251)
Name: NF1401_high_26
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_high_26 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 34743346 - 34743126
Alignment:
| Q |
30 |
ctctcaattccaccttgcatacatgttagattaagcaaatctaatacatgtgcactcattaatcggttcaaaatacattattgtctgtaaaattgaatag |
129 |
Q |
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| T |
34743346 |
ctctcaattccaccttgcatacatgttagattaagcaaatccaatacatgtgcactcattaatcggttcaaaatacattattgtctgtaaaattgaatag |
34743247 |
T |
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| Q |
130 |
atagaacacaacnnnnnnnnnactctcatggtacttattgatgaaatataagaaaagaaaacctttcttacatnnnnnnnggttgagattaagcatgcaa |
229 |
Q |
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| T |
34743246 |
atagaacacaactttttttttactctcatggtacttatcgatgaaatataagaaaagaaaacctttcttacat-aaaaaaggttgagattaagcatacaa |
34743148 |
T |
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| Q |
230 |
gtgatggtggatcaattggaaa |
251 |
Q |
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| T |
34743147 |
ttgatggtggatcaattggaaa |
34743126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 29549858 - 29550010
Alignment:
| Q |
48 |
atacatgttagattaagcaaatctaatacatgtgcactcattaatcggttcaaaatacattattgtctgtaaaattgaatagatagaacacaacnnnnnn |
147 |
Q |
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| T |
29549858 |
atacatggtagattaagcaaatccaaaacatttgaactcattcatcggttcaaaatacattgttgtgcatcaaatataatagatagaacacca---aatt |
29549954 |
T |
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| Q |
148 |
nnnactctcatggtacttattgatgaaatataagaaaagaaa-acctttcttacat |
202 |
Q |
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| T |
29549955 |
tttactctcatggtgctcaatgatgaaatataagaaaagaaacacatttcttacat |
29550010 |
T |
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