View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1401_high_30 (Length: 215)
Name: NF1401_high_30
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 5424702 - 5424551
Alignment:
| Q |
46 |
aaatgttcattaaattgttcaagattatcttcttcaacggtcaatccatccttatgtgaagacttttatacttatttacaaacaaatttatctattgttc |
145 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |
|
|
| T |
5424702 |
aaatgttcattagattgttcaagatcatcttcttcaacggtcaatccatccttatgtgaagacttttatactcatttacaaacaaatttatttattgctc |
5424603 |
T |
|
| Q |
146 |
ctttttgtggttattttaaacataacgctcgttcttttctttattttttcat |
197 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5424602 |
ctttttgtggttattttaaatataacgctcgttcttttctttattttttcat |
5424551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 15741450 - 15741397
Alignment:
| Q |
27 |
aatgagatggacatcatcaaaatgttcattaaattgttcaagattatcttcttc |
80 |
Q |
| |
|
|||||||| | |||||| |||| ||||||| |||||||||||||||||||||| |
|
|
| T |
15741450 |
aatgagattgtcatcattcaaattttcattagattgttcaagattatcttcttc |
15741397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 702931 - 702843
Alignment:
| Q |
51 |
ttcattaaattgttcaagattatcttcttcaacggtcaatccatccttatgtgaagacttttatacttatttacaaacaaatttatcta |
139 |
Q |
| |
|
||||||| ||||||||||||||| |||||| | |||||||||||| |||| ||||||| || |||| |||||||||||||||||||| |
|
|
| T |
702931 |
ttcattagattgttcaagattattttcttctatggtcaatccatcattattcgaagactcttttactcgtttacaaacaaatttatcta |
702843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 15086035 - 15086140
Alignment:
| Q |
46 |
aaatgttcattaaattgttcaagattatcttcttcaacggtcaatccatccttatgtgaagacttttatacttatttacaaacaaatttatctattgttc |
145 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| || |||| |||||||| ||| |||| | || |||| |||||||||||||||||||||||| || |
|
|
| T |
15086035 |
aaattttcattagattgttcaagattatcttcatctacggctaatccatcattactcgaaggttcttctactcatttacaaacaaatttatctattgctc |
15086134 |
T |
|
| Q |
146 |
cttttt |
151 |
Q |
| |
|
| |||| |
|
|
| T |
15086135 |
cctttt |
15086140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 25810661 - 25810565
Alignment:
| Q |
46 |
aaatgttcattaaattgttcaagattatcttcttcaacggtcaatccatccttatgtgaagacttttatacttatttacaaacaaatttatctattg |
142 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||| |||||||||||| | |||| || ||| | |||| |||||||||||||||||||||| |
|
|
| T |
25810661 |
aaattttcattaaattgttcaaaatcatcttcttctacggtcaatccaacattattcaaaaactctactactaggttacaaacaaatttatctattg |
25810565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 26590292 - 26590232
Alignment:
| Q |
51 |
ttcattaaattgttcaagattatcttcttcaacggtcaatccatccttatgtgaagacttt |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| ||||| ||| |||| |||||||||| |
|
|
| T |
26590292 |
ttcattagattgttcaagattatcttcttttacgaccaatcaatcgttatctgaagacttt |
26590232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University