View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_high_5 (Length: 515)
Name: NF1401_high_5
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 5949717 - 5949312
Alignment:
| Q |
13 |
aatatggagatcttctgcaaagttttgcacttcctcgcacgtctcgagcgctttgatggagtctggccaattgctgaaaacttcatttagaaaagattct |
112 |
Q |
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| T |
5949717 |
aatatggagatcttctgcaaagttttgcacttcctcgcatgtctcgagcgctttgatggagtctggccaattgctgaaaacttcatttagaaaagattct |
5949618 |
T |
|
| Q |
113 |
gtgtaaccaataagattgtctgcaccatagttttcagtcatttggagatgctctgctgcacatcttagactaactacattcaatgctgtgatttctaatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5949617 |
gtgtaaccaataagattgtctgcaccatagttttcagtcatttggagatgctctgctgcacatcttagactaactacattcaatgctgtgatttctaatt |
5949518 |
T |
|
| Q |
213 |
tcgcaccatagcaaaattttgttatgagctcaaatgttttggctccaccaggaacatcatgaagttgcaaaatactacttgatccatcctcacttgtgga |
312 |
Q |
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| T |
5949517 |
tcacaccatagcaaaattttgttatgagctcaaatgttttggctccaccaggaacatcatgaagttgcaaaatactacttgatccatcctcacttgtgga |
5949418 |
T |
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| Q |
313 |
ctctgcaattagtttctttagtagtccacttctagaaagtaatggaaactgcatcaaaaccacaaatgttgnnnnnnnctaatcaccaacatgaattata |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
5949417 |
ctctgcaattagtttctttagtagtccacttctagaaagtaatggaaactgcatcaaaatcacaaatgttgaaaaaaactaatcaccaacatgaattata |
5949318 |
T |
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| Q |
413 |
tacttt |
418 |
Q |
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|||||| |
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| T |
5949317 |
tacttt |
5949312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 135 - 362
Target Start/End: Original strand, 28321324 - 28321551
Alignment:
| Q |
135 |
caccatagttttcagtcatttggagatgctctgctgcacatcttagactaactacattcaatgctgtgatttctaatttcgcaccatagcaaaattttgt |
234 |
Q |
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||||||| || ||| ||||||| | || ||||||||||||||||||||||| ||||| |||| ||||||||||| ||| ||||||||||||| ||||| |
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| T |
28321324 |
caccataattctcattcatttgtaaatattctgctgcacatcttagactaaccacatttaatggtgtgatttctagttttacaccatagcaaaactttgt |
28321423 |
T |
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| Q |
235 |
tatgagctcaaatgttttggctccaccaggaacatcatgaagttgcaaaatactacttgatccatcctcacttgtggactctgcaattagtttctttagt |
334 |
Q |
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||||| ||||||||||||| |||||||||| |||||||||||||| |||||| | |||||||||| ||| ||||||| || |||| |||||||||||| |
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| T |
28321424 |
tatgatctcaaatgttttgtctccaccaggtacatcatgaagttgtaaaatagaatttgatccatcttcatttgtggagtcagcaaaaagtttctttagt |
28321523 |
T |
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| Q |
335 |
agtccacttctagaaagtaatggaaact |
362 |
Q |
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| |||||||||||| || |||||||||| |
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| T |
28321524 |
aatccacttctagagagcaatggaaact |
28321551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 28321251 - 28321287
Alignment:
| Q |
62 |
gctttgatggagtctggccaattgctgaaaacttcat |
98 |
Q |
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||||| || |||||||||||||||||||||||||||| |
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| T |
28321251 |
gcttttattgagtctggccaattgctgaaaacttcat |
28321287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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