View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_high_6 (Length: 487)
Name: NF1401_high_6
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 30 - 479
Target Start/End: Complemental strand, 37663652 - 37663203
Alignment:
| Q |
30 |
gtacagcgtcaaaatatttgccccaactaccctactggcttttatggttttggttcctattaactggactggaaaaactttggaagcaccagcagccaag |
129 |
Q |
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| T |
37663652 |
gtacagtgtcaaaatatttgccccaactaccctactggcttttatggttttggttcccattaactggactggaaaaactttggaagcaccagcagccaag |
37663553 |
T |
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| Q |
130 |
ggtctgacatttagcgatattgacaagctttcaatatcgaacattccatttggatcaaagaggtgcgctaatccatttgacaaatttgttcaagctctat |
229 |
Q |
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| T |
37663552 |
ggtctgacatttagcgatattgacaagctttcaatatcgaacattccatttggatcaaaaaggtgcgctaatccatttgacaaatttgttcaagctctat |
37663453 |
T |
|
| Q |
230 |
attactcccttttccctaacacaccacaaatattattgagaattgaaggagttatatattttgctagtaaaatagtacattgtaaatttgatttttgtct |
329 |
Q |
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| T |
37663452 |
attactcccttttccctaacacaccacaaatattattgagaattgaaggagttatatattttgctagtaaaatagtacattgtaaatttgatttttgtct |
37663353 |
T |
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| Q |
330 |
tttattctagacaaaccaattaagagtccgaataataactgaattgacttcttttgtcataatagagttgtagactctttgtatcacgaatcttgataca |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37663352 |
tttattctagacaaaccaattaagagtccgaataataactgaattgacttcttttgtcataatagagttgtagactcttcgtatcacgaatcttgataca |
37663253 |
T |
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| Q |
430 |
taacctggttgcttcatactatatgttacgagtttcacatcatattgttc |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37663252 |
taacctggttgcttcatactatatgttacgagtttcacatcattttgttc |
37663203 |
T |
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