View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_high_9 (Length: 437)
Name: NF1401_high_9
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 30 - 428
Target Start/End: Complemental strand, 27603344 - 27602946
Alignment:
| Q |
30 |
atcttgtcctaatctcgaaggcgacgtagagatgtgcacaacaagttggaaatttgagagtgacccaacacttctacaaaattcaagattataaatccca |
129 |
Q |
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| T |
27603344 |
atcttgtcctaatctcgaaggcgaggtagagatgtgcacaacaagttggaaatttgagagtgacccaacacttctacaaaattcaagattataaatcaca |
27603245 |
T |
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| Q |
130 |
aattgggatggcttgaatggactgactgaaacattaggactggggtatcggtctacacactgttgagaggaaatcaaggggttgaagattgaaggggtga |
229 |
Q |
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| T |
27603244 |
aattgggatggcttgaatggactgactgaaacattaggactggggtatcggtctacacactgttgagaggaaatcaaggggttgaagattgaaggggtga |
27603145 |
T |
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| Q |
230 |
agccagaagaaaggagactaggcttcagaaatctccgcgaaatgcaagaaatcaaagccgacgccattctcttaaccaaaacagaattctgagagaagaa |
329 |
Q |
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| T |
27603144 |
agccagaagaaaggagactaggcttgagaaatctccgccaagcgcgagaaatcaaagccgacgccattctcttaaccaaaacagaattctgagagaataa |
27603045 |
T |
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| Q |
330 |
aaaagccacaaaatcgaattgaaagtatccaatcaaatgaaaatgatgaaacaatatagggaatatttgatttctagggttgaagcaacatagaataat |
428 |
Q |
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| T |
27603044 |
aaaagtcacaaaatcgaattgaaagtatccaatcaaatgaaaatgatgaaacaatatagggaatatttgatttctagggttgaagcaacatagaataat |
27602946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 52211016 - 52211155
Alignment:
| Q |
36 |
tcctaatctcgaaggcgacgtagagatgtgcacaacaagttggaaatttgagagtgacccaacacttctacaaaattcaagattataaatcccaaattgg |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
52211016 |
tcctaatctcgaaggcgacgtagagatgtgcacaacaagttggaaatttgagagtgagccaacacttttacaattttcaagattataaaccccaaattgg |
52211115 |
T |
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| Q |
136 |
gatggcttgaatggactgactgaaacattaggactggggt |
175 |
Q |
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| T |
52211116 |
gatggcttgaatggactgactgaaacattagaaccggggt |
52211155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 52211151 - 52211245
Alignment:
| Q |
207 |
ggggttgaagattgaaggggtgaagccagaagaaaggagactaggcttcagaaatctccgcgaaatgcaagaaatcaaagccgacgccattctct |
301 |
Q |
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| T |
52211151 |
ggggttgaaaattgaaggtgagaagccagaagaaaggagagtaggcttgagaaacctccgcgaatcgcaagaaatcaaagctgccggcattctct |
52211245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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