View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1401_low_1 (Length: 693)
Name: NF1401_low_1
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 30 - 609
Target Start/End: Complemental strand, 45740254 - 45739681
Alignment:
| Q |
30 |
attaacatatccacaacaaattgcacgttctgcattcatatatgatggaaactttgctttattttgttgaacgctttgatattaagatccttgaatgcac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45740254 |
attaacatatccacaacaaattgcacgttctgcattcatatatgatggaaactttgctttattttgttgaacgctttgatattaagatccttgaatgcac |
45740155 |
T |
|
| Q |
130 |
tcaatagttgtcatctagaacccaactaccctttgatcgtggtttgtttgttgtgaatattcattgcaagattttgacacttatcagttctcattgggtg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45740154 |
tcaatagttgtcatctagaacccaactaccctttgatcgtggtttgtttgttgtgaatattcattgcaagattttgacacttatcagttctcattgggtg |
45740055 |
T |
|
| Q |
230 |
tgtaatggagctacgctgannnnnnnnnnnnnngaagtaaaattcctaatgcacctagattcatggcccataaactttataatgcaccctacgtactaat |
329 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45740054 |
tgtaatggagctacgctgaatatatat------gaagtaaaattcctgatgcacctagattcatggcccataaactttataatgcaccctacggactaat |
45739961 |
T |
|
| Q |
330 |
gatacccccctagttagaaaacagttctatccaaaaggtgtttggtcaattttttaaattttgcatcgtagatgttatggtctagtcaaacatacactct |
429 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45739960 |
gatacccccctagttggaaaacagttctatccaaaaggtgtttggtcaattttttaaattttgcatcgtagatgttatggtctagtcaaacatacactct |
45739861 |
T |
|
| Q |
430 |
agatctgaccgttataagcgtggttacattgttcagcgaccgtagattcataaccgtattccatacctgtgtatgaaagttgctttgtaagtctcttgca |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45739860 |
agatctgaccgttataagcgtggttacattgttcagcggccgtagattcataaccgtattccatacctgtgtatgaaagttgctttataagtctcttgca |
45739761 |
T |
|
| Q |
530 |
ttgatcaaaagtttcttggattgatcggatcataacttctgatgacacaaaatctatcgtttgttacgacccgacctttg |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45739760 |
ttgatcaaaagtttcttggattgatcggatcataacttctgacgacacaaaatctatcgttggttacgacccgacctttg |
45739681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University