View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1401_low_11 (Length: 498)

Name: NF1401_low_11
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1401_low_11
NF1401_low_11
[»] chr4 (18 HSPs)
chr4 (142-425)||(5552313-5552595)
chr4 (1-147)||(5552626-5552772)
chr4 (246-425)||(5853883-5854066)
chr4 (1-147)||(5853652-5853798)
chr4 (162-425)||(5604590-5604853)
chr4 (257-363)||(5540201-5540307)
chr4 (159-425)||(5857240-5857506)
chr4 (273-423)||(6030992-6031143)
chr4 (269-341)||(5572076-5572148)
chr4 (277-341)||(5584291-5584355)
chr4 (1-57)||(5857641-5857697)
chr4 (163-318)||(5848825-5848980)
chr4 (160-425)||(5612705-5612970)
chr4 (160-425)||(5895883-5896148)
chr4 (1-86)||(3748464-3748549)
chr4 (257-425)||(5887135-5887303)
chr4 (5-45)||(5564317-5564357)
chr4 (160-229)||(3748285-3748354)
[»] chr8 (1 HSPs)
chr8 (287-363)||(1482382-1482458)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 142 - 425
Target Start/End: Complemental strand, 5552595 - 5552313
Alignment:
Q  142 tttcatcaatctgctatttatttggattactcaacaaacagtttttctagtattccacaagatattggtaattacctgtcttccacattgttnnnnnnnn 241  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||            
T  5552595 tttcatcaatctgttatttatttggattactcaacaaacaatttttctagtattccacaagatattggtaattacttgtcttccacattgtttctctctc 5552496  T
Q  242 nnnnaaataataacatacaaggaagtttccctcattccctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaat 341  Q
        |||| ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5552495 tctcaaatgataaagtacaaggaagtttccctcattcc-tctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaat 5552397  T
Q  342 gcccgaatgtttaatgacaatggctggtacaattgaggttataaatttgagtaaatacaatctcactggctctataccagatat 425  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  5552396 gcccgcatgtttaatgacaatggctgttacaattgaggttataaatttgagtaaaaacaatctcactggttctataccagatat 5552313  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 5552772 - 5552626
Alignment:
Q  1 tcagataaccagattcatggaatagtaccaaattggatttggaaattaccatatcttgataagctaaatatttctcacaatattcttactagctttcaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  5552772 tcagataaccagattcatggaatagtaccaaactggatttggaaactaccatatcttgataagctaaatatttctcacaattttcttactaactttcaaa 5552673  T
Q  101 gaccaatgaagaatcatattcccaaccttatacttcttgactttcat 147  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  5552672 gaccaatgacgaatcatattcccaaccttatacttcttgaccttcat 5552626  T

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Target: chr4; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 246 - 425
Target Start/End: Original strand, 5853883 - 5854066
Alignment:
Q  246 aaataataacatacaaggaagtttccctcattccctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaatgccc 345  Q
    |||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||    
T  5853883 aaataataacttacagggaagtttccctcatttcctctgcaatgcttcaaatcttcaagtacttgatctttccattaataaaatttttggaacaattccc 5853982  T
Q  346 gaatgtttaatgac----aatggctggtacaattgaggttataaatttgagtaaatacaatctcactggctctataccagatat 425  Q
    | ||||||||||||    |||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  5853983 gcatgtttaatgacaattaatggctggtaccatttaggtcataaatttgagtaaaaacaatctcactggctctataccagatat 5854066  T

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Target: chr4; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 5853652 - 5853798
Alignment:
Q  1 tcagataaccagattcatggaatagtaccaaattggatttggaaattaccatatcttgataagctaaatatttctcacaatattcttactagctttcaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| |||||||||||| |||| |||| ||||||||    
T  5853652 tcagataaccagattcatggaatagtaccaaactggatttggaaactaccatatcttgatacgctaaagatttctcacaattttctcactaactttcaaa 5853751  T
Q  101 gaccaatgaagaatcatattcccaaccttatacttcttgactttcat 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5853752 gaccaatgaagaatcatattcccaaccttatacttcttgactttcat 5853798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 162 - 425
Target Start/End: Complemental strand, 5604853 - 5604590
Alignment:
Q  162 tttggattactcaacaaacagtttttctagtattccacaagatattggtaattacctgtcttccacattgttnnnnnnnnnnnnaaataataacatacaa 261  Q
    |||||||||||||||||||| |||||||  ||| ||||| |||||||| |||||||| |||||  |||| ||            |||||||||  |||||    
T  5604853 tttggattactcaacaaacaatttttctgttatcccacatgatattggcaattacctttcttctgcattttttatatctctttcaaataataatttacaa 5604754  T
Q  262 ggaagtttccctcattccctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaatgcccgaatgtttaatgacaa 361  Q
    |||||  ||||||||||||||||||| |||||||||||||||||||||||| ||||| | || || ||||||||||||||  |   ||||||||| ||||    
T  5604753 ggaagcatccctcattccctctgcaaagcttcaaatcttcaagtgcttgatatttccttcaacaacatttctggaacaatttctccatgtttaatcacaa 5604654  T
Q  362 tggctggtacaattgaggttataaatttgagtaaatacaatctcactggctctataccagatat 425  Q
    || || ||||  ||||||   |||||||||  ||  ||||||| | ||||||| ||||||||||    
T  5604653 tgactagtacccttgaggcattaaatttgaaaaagaacaatctaaatggctctctaccagatat 5604590  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 5540201 - 5540307
Alignment:
Q  257 tacaaggaagtttccctcattccctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaatgcccgaatgtttaat 356  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||| |||  |||| ||||    
T  5540201 tacaaggcagtatccctcattccctctgcaatgcttcaaatcttcaagtgcttgatatttccattaatagaatttctggagcaattccctcatgtctaat 5540300  T
Q  357 gacaatg 363  Q
    || ||||    
T  5540301 gaaaatg 5540307  T

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Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 159 - 425
Target Start/End: Complemental strand, 5857506 - 5857240
Alignment:
Q  159 ttatttggattactcaacaaacagtttttctagtattccacaagatattggtaattacctgtcttccacattgttnnnnnnnnnnnnaaataataacata 258  Q
    |||||||||||||||||||||||  |||||   |||  ||||||||||||| ||||||||||||||||||  |||            |||||||||  ||    
T  5857506 ttatttggattactcaacaaacaaattttcagttatctcacaagatattggcaattacctgtcttccacaaagtttctatctctttcaaataataattta 5857407  T
Q  259 caaggaagtttccctcattccctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaatgcccgaatgtttaatga 358  Q
    |||||||   ||||||||||||||||||  ||||||||| |||||||||||||| ||||| | || || |||||||||||||| ||   |||||||||||    
T  5857406 caaggaaacatccctcattccctctgcagagcttcaaatattcaagtgcttgatatttccttcaacaacatttctggaacaattcctccatgtttaatga 5857307  T
Q  359 caatggctggtacaattgaggttataaatttgagtaaatacaatctcactggctctataccagatat 425  Q
    ||||| || |||   ||||||   ||||||| || ||  |||||||||| ||| | |||||||||||    
T  5857306 caatgactcgtatccttgaggcattaaatttaagaaagaacaatctcaccggccccataccagatat 5857240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 423
Target Start/End: Original strand, 6030992 - 6031143
Alignment:
Q  273 tcattccctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaatgcccgaatgtttaatgacaatggctggtaca 372  Q
    ||||||||||||||||||||||||  |||| |||||| |||||||||||||||| |||| ||||||||| ||   ||||||| ||| ||||||| |||      
T  6030992 tcattccctctgcaatgcttcaaacattcaggtgcttaatctttccattaataagatttatggaacaataccgacatgtttactgataatggctagtatc 6031091  T
Q  373 attgaggttataaatttgagta-aatacaatctcactggctctataccagat 423  Q
    |||||||  ||||||||||||| || | |||||||||||||  |||||||||    
T  6031092 attgaggcaataaatttgagtagaaaaaaatctcactggctacataccagat 6031143  T

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Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 5572076 - 5572148
Alignment:
Q  269 tccctcattccctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaat 341  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  5572076 tccctcaatccctctgcaatgcttcaaatcttcaagtgcttgatatttccattaatagcatttctggaacaat 5572148  T

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Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 5584291 - 5584355
Alignment:
Q  277 tccctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaat 341  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  5584291 tccctctgcaatgcttcaaatcttcaagtgcttgatatttccattaatagcatttctggaacaat 5584355  T

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Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5857697 - 5857641
Alignment:
Q  1 tcagataaccagattcatggaatagtaccaaattggatttggaaattaccatatctt 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5857697 tcagataaccagattcatggaatagtaccaaattggatttggaaactaccatatctt 5857641  T

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Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 163 - 318
Target Start/End: Original strand, 5848825 - 5848980
Alignment:
Q  163 ttggattactcaacaaacagtttttctagtattccacaagatattggtaattacctgtcttccacattgttnnnnnnnnnnnnaaataataacatacaag 262  Q
    |||||||||||||| |||| ||| ||| |||| ||||| |||||||||||||| ||||||||||||   ||            ||||||||   ||||||    
T  5848825 ttggattactcaaccaacaatttctctggtatcccacatgatattggtaattatctgtcttccacaaattttctatctctttcaaataatagtttacaag 5848924  T
Q  263 gaagtttccctcattccctctgcaatgcttcaaatcttcaagtgcttgatctttcc 318  Q
    ||||  ||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  5848925 gaagcatccctcattccctctgcaaagcttcaaatcttctagtgcttgatctttcc 5848980  T

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Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 425
Target Start/End: Complemental strand, 5612970 - 5612705
Alignment:
Q  160 tatttggattactcaacaaacagtttttctagtattccacaagatattggtaattacctgtcttccacattgttnnnnnnnnnnnnaaataataacatac 259  Q
    ||||||||||||||||| ||||  || |||  ||| || || |||||||||||||||||||||||  ||| |||            ||||||||   |||    
T  5612970 tatttggattactcaaccaacaaattctctgttatcccgcatgatattggtaattacctgtcttctgcatggtttctatctctttcaaataatagtttac 5612871  T
Q  260 aaggaagtttccctcattccctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaatgcccgaatgtttaatgac 359  Q
    |||||||  ||||||||||||||||||| ||||||||||||||| |||||||| |||||   || || ||||| ||||||||  |   ||||||||||||    
T  5612870 aaggaagcatccctcattccctctgcaaagcttcaaatcttcaaatgcttgatatttcctacaacaacatttcaggaacaatttctccatgtttaatgac 5612771  T
Q  360 aatggctggtacaattgaggttataaatttgagtaaatacaatctcactggctctataccagatat 425  Q
    |||| || ||||  ||||||   |||||||||| ||  ||||||| | ||| ||| ||||||||||    
T  5612770 aatgactagtacccttgaggcattaaatttgaggaataacaatctaaatggatctttaccagatat 5612705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 425
Target Start/End: Original strand, 5895883 - 5896148
Alignment:
Q  160 tatttggattactcaacaaacagtttttctagtattccacaagatattggtaattacctgtcttccacattgttnnnnnnnnnnnnaaataataacatac 259  Q
    ||||||||||||||||| || |  || |||  ||| ||||| ||||||||||||||| ||||||||| |||||             |||||||||  |||    
T  5895883 tatttggattactcaaccaataaattctctgttatcccacatgatattggtaattacttgtcttccatattgtatctatctctttcaaataataatttac 5895982  T
Q  260 aaggaagtttccctcattccctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaatgcccgaatgtttaatgac 359  Q
    | ||||   ||||||||||||||| ||| |||||||||||||||||||||||| ||||| | || || |||||||||||||| ||   ||||||||| ||    
T  5895983 atggaaccatccctcattccctcttcaaagcttcaaatcttcaagtgcttgatatttccttcaacaacatttctggaacaattcctccatgtttaatcac 5896082  T
Q  360 aatggctggtacaattgaggttataaatttgagtaaatacaatctcactggctctataccagatat 425  Q
    |||| || ||||  || |||   |||||||||| ||  ||||||| | | |||| |||||||||||    
T  5896083 aatgactagtacccttcaggcattaaatttgaggaataacaatctaaatagctccataccagatat 5896148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 3748549 - 3748464
Alignment:
Q  1 tcagataaccagattcatggaatagtaccaaattggatttggaaattaccatatcttgataagctaaatatttctcacaatattct 86  Q
    ||||||||||||||||| |||||||||||||||||| |||||||| | |||||||| ||    || ||||||||||||||| ||||    
T  3748549 tcagataaccagattcaaggaatagtaccaaattgggtttggaaactgccatatctagaagctcttaatatttctcacaatcttct 3748464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 425
Target Start/End: Original strand, 5887135 - 5887303
Alignment:
Q  257 tacaaggaagtttccctcattccctctgcaatgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaatgcccgaatgtttaat 356  Q
    ||||||||||  ||||| ||||||| |||||||||||| |||| |||||||||||||||||| | || || || || ||||||||  |    ||||||||    
T  5887135 tacaaggaagcatccctgattccctttgcaatgcttcatatctgcaagtgcttgatctttccttcaacaacatctcaggaacaatttctccttgtttaat 5887234  T
Q  357 gacaatggctggtacaattgaggttataaatttgagtaaatacaatctcactggctctataccagatat 425  Q
     |||||| || ||||  ||||||   |||||||||| ||  ||||||| | |||| |||||||||||||    
T  5887235 tacaatgactagtacccttgaggcattaaatttgaggaataacaatctaaatggcactataccagatat 5887303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 5564357 - 5564317
Alignment:
Q  5 ataaccagattcatggaatagtaccaaattggatttggaaa 45  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  5564357 ataaccagattcaaggaatagtaccaaattggatttggaaa 5564317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 3748354 - 3748285
Alignment:
Q  160 tatttggattactcaacaaacagtttttctagtattccacaagatattggtaattacctgtcttccacat 229  Q
    |||||||||||||| || ||||  ||||||  ||| ||| ||||||||||||||||||| ||||||||||    
T  3748354 tatttggattactctaccaacaaattttctgttatcccagaagatattggtaattacctatcttccacat 3748285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 1482458 - 1482382
Alignment:
Q  287 atgcttcaaatcttcaagtgcttgatctttccattaataaaatttctggaacaatgcccgaatgtttaatgacaatg 363  Q
    |||||||||||||| | ||||||||||||||| | || || ||||||||| |||| ||   ||||||||||| ||||    
T  1482458 atgcttcaaatcttaatgtgcttgatctttccttcaacaatatttctggatcaattccttcatgtttaatgaaaatg 1482382  T

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