View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_12 (Length: 490)
Name: NF1401_low_12
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Original strand, 51688470 - 51688848
Alignment:
| Q |
12 |
aagaagccactgcatattctataatcagacaaatcaaaagaagacacaaacaacccaagagtcctaaatgagaaaatagaaggctcaaatctcaattaat |
111 |
Q |
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| T |
51688470 |
aagaagccactgcatattctataatcagacaaatcaaaagaagacacaaacaacccaagagtcctaaatgagaaaatagaaggctcaaatctcaattaat |
51688569 |
T |
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| Q |
112 |
aataacatgccgaataaaaaagtgtgtaaaagatgattaaatggttttaagtggattgaaacttacaaagtttgtagaagctaatgttaggtaagaagag |
211 |
Q |
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| T |
51688570 |
aataacatgccgaataaaaaagtgtgtaaaagatgattaaatggttttaagtggattgaaacttacaaagtttgtagaagctaatgttaggtaagaagag |
51688669 |
T |
|
| Q |
212 |
atggagatatcaccagttggcagtagctcagaatctgtatctagtggagcaaagcaaagcaaagccaaagaacataatcatatcgaaagagaaagaagat |
311 |
Q |
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| T |
51688670 |
atggagatatcaccagttggcagtagctcagaatctgtatctagtgg-----agcaaagcaaagccaaagaacacgatcatatcgaaagagaaagaagat |
51688764 |
T |
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| Q |
312 |
ggtgaacgctcgtgaacgacatggatatcacgggccagccatgtatatccgaaatacaattatgattctttcctacgtgtttat |
395 |
Q |
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| T |
51688765 |
ggtgaacgctcgtgaacgacatggatatcacgggccagccatgtatatccgaaatacaattatgattctttcctacgtgtttat |
51688848 |
T |
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