View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_14 (Length: 451)
Name: NF1401_low_14
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 30 - 444
Target Start/End: Original strand, 48993347 - 48993761
Alignment:
| Q |
30 |
gttaggaggataagaattgttgctgaacaaactccaattcatcacatacttcaaccaccaacaattgcatctttgttggctattatcattggaacagtgc |
129 |
Q |
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| T |
48993347 |
gttaggaggataagaattgttgctgaacaaactccaattcatcacatacttcaaccaccaacaattgcatctttgttggctattatcattggaacagtgc |
48993446 |
T |
|
| Q |
130 |
ctcagttgaaaacatttttctttggaaatgatgcaccaatgtcttttatgacagatagtttggaaattttggcaggtgcaatggtgccttgtgtgatgct |
229 |
Q |
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| T |
48993447 |
ctcagttgaaaacatttttctttggaaatgatgcaccaatgtcttttatgacagatagtttggaaattttggcaggtgcaatggtgccttgtgtgatgct |
48993546 |
T |
|
| Q |
230 |
tatactagggggtatgctagctgaaggaccaaatgaatcaacacttggaattaaaactacaattgggataattgtggcaagacttgtggtgcttcctgtt |
329 |
Q |
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| T |
48993547 |
tatactagggggtatgctagctgaaggaccaaatgaatcaacacttggaattaaaactacaattgggataattgtggcaagacttgtggtgcttcctgtt |
48993646 |
T |
|
| Q |
330 |
ataggaattggagttgttgtgttggctgataagttgaattttttggttgaaaatgatgctatgtttaggtttgtgcttttgttgcaatatacaacaccaa |
429 |
Q |
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| T |
48993647 |
ataggaattggagttgttgtgttggctgataagttgaattttttggttgaaaatgatgctatgtttaggtttgtgcttttgttgcaatatacaacaccaa |
48993746 |
T |
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| Q |
430 |
gtgctattttgttgg |
444 |
Q |
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| T |
48993747 |
gtgctattttgttgg |
48993761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 30 - 436
Target Start/End: Complemental strand, 22624383 - 22623977
Alignment:
| Q |
30 |
gttaggaggataagaattgttgctgaacaaactccaattcatcacatacttcaaccaccaacaattgcatctttgttggctattatcattggaacagtgc |
129 |
Q |
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||||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| || ||||| ||||| | |
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| T |
22624383 |
gttaggaggattagaattgttgctgaacaaactccgcttcaacatatacttcaaccaccaacaattgcatctttgttggctatcataattggcacagtac |
22624284 |
T |
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| Q |
130 |
ctcagttgaaaacatttttctttggaaatgatgcaccaatgtcttttatgacagatagtttggaaattttggcaggtgcaatggtgccttgtgtgatgct |
229 |
Q |
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|||| |||||| | || ||||||||| ||||||| ||| | || || || ||||||||||| || ||||| | |||||||||||||||| ||||||||| |
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| T |
22624283 |
ctcaattgaaagctttgttctttggatatgatgctccattttcgttcattacagatagtttagagattttaggtggtgcaatggtgccttctgtgatgct |
22624184 |
T |
|
| Q |
230 |
tatactagggggtatgctagctgaaggaccaaatgaatcaacacttggaattaaaactacaattgggataattgtggcaagacttgtggtgcttcctgtt |
329 |
Q |
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|||| ||||||||||||| ||||||||||||||||| || | ||||||| ||| |||||| ||||| || ||||||||||||| ||||||| |||||| |
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| T |
22624183 |
tatattagggggtatgcttgctgaaggaccaaatgagtctagacttggacttagaactactattggtattgttgtggcaagactcttggtgctacctgtt |
22624084 |
T |
|
| Q |
330 |
ataggaattggagttgttgtgttggctgataagttgaattttttggttgaaaatgatgctatgtttaggtttgtgcttttgttgcaatatacaacaccaa |
429 |
Q |
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| || ||||| |||||| ||| | ||||| | ||||| ||||| |||||||||||||||||||| ||||||||||||||||| || ||| |||| | |
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| T |
22624083 |
cttggtattgggattgttgctttgtcgaataagctaaatttcttggtcgaaaatgatgctatgtttagatttgtgcttttgttgcagtacacatcaccta |
22623984 |
T |
|
| Q |
430 |
gtgctat |
436 |
Q |
| |
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||||||| |
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| T |
22623983 |
gtgctat |
22623977 |
T |
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