View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_15 (Length: 449)
Name: NF1401_low_15
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 3 - 441
Target Start/End: Original strand, 15851819 - 15852258
Alignment:
| Q |
3 |
tttccaagtttcaaatcctttcgaagagctcggactaagccaattataggtgggtataaccttagtacctcgtacagaatcatggtaacctatggaaaca |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15851819 |
tttccaagtttcaaatcctttcgaagagctcggactaagccaattataggtgggtataaccttagtacctcgtacagaatcatggtaacctatggaatca |
15851918 |
T |
|
| Q |
103 |
aaaaagtttatgtattaatattcatcaaaatgaaattgtgtgattaaaaacgatcttctcacgtcaaattttcaagtgaaattgtaaagggtgattatat |
202 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15851919 |
gaaaagattatgtattaatattcatcaaaatgaaattgtgtgattaaaaacgatcttctcacgtcaaattttcaagtgaaattgctaagggtgattatat |
15852018 |
T |
|
| Q |
203 |
atctctctttcgacaattgacatgatctcccctaatttccacaagttcacccctcc-ggggattcatggtcctagcgggggttcataccaattcatctcc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15852019 |
atctctctttcgacaattgacatgatctcccctaatttccacaagttccccactccgggggattcatggtcctagcgggggttcataccaattcatctcc |
15852118 |
T |
|
| Q |
302 |
gacctaggtcgacttactttatacaaggttcgaaccagaaacctcaaatttgaaatcaccccttttatatcagtaaagagagagatagatacaaaacttc |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15852119 |
gacctaggtcgacttactttatacaaggttcgaaccagaaagctcaaatttgaaatcaccccttttatatcagtaaagagagagatagttacaaaacttc |
15852218 |
T |
|
| Q |
402 |
atgtactaaaatcatttgaaatttaaacatgagaataatc |
441 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
15852219 |
atgtactaagatcatttgaaatttaaacatgagaataatc |
15852258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 110 - 425
Target Start/End: Original strand, 15844715 - 15845023
Alignment:
| Q |
110 |
ttatgtattaatattcatcaaaatgaaattgtgtgattaaaaacgatcttctcacgtcaaattttcaagtgaaattgtaaagggtgattatatatctctc |
209 |
Q |
| |
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||||||||||||| |||||||||||||| | |||||||||||| ||||||| ||| |||||||| |||| ||| |||| |||||| ||||||| |
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| T |
15844715 |
ttatgtattaataatcatcaaaatgaaactatgtgattaaaaattatcttcttgtgtccaattttcacgtgacattaataagga-gattatgaatctctc |
15844813 |
T |
|
| Q |
210 |
tttcgacaattgacatgatctcccctaatttccacaagttcacccctccggggattcatggtcctagcgggggttcataccaattcatctccgacctagg |
309 |
Q |
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| || | |||||||||||| |||| |||||||||||| ||| |||||| || |||||||||||||||| ||||||| ||||||||| | ||||||| |
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| T |
15844814 |
tctcaataattgacatgatgtccc-taatttccacaatttccaccctccagg----catggtcctagcggggattcatacgaattcatctactacctagg |
15844908 |
T |
|
| Q |
310 |
tcgacttactttatacaaggttcgaaccagaaacctcaaatttgaaatcaccccttttatatcagtaaagagagagatagatacaaaacttcatgtacta |
409 |
Q |
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| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||||||||| |||||| |||| | | |
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| T |
15844909 |
ttgacttattttatacaaggttcgaaccagaaacctcaaatttgaaatcaccccaataatatcagtaaaaaaagagatagatac-aaactttatgtgcca |
15845007 |
T |
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| Q |
410 |
aaatcatttgaaattt |
425 |
Q |
| |
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| |||||||||||||| |
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| T |
15845008 |
agatcatttgaaattt |
15845023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 15858840 - 15858983
Alignment:
| Q |
101 |
caaaaaagtttatgtattaatattcatcaaaatgaaattgtgtgattaaaaacgatcttctcacgtcaaattttcaagtgaaattgtaaagggtgattat |
200 |
Q |
| |
|
|||||| | ||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| ||||| |||||||||||| |
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| T |
15858840 |
caaaaaggattatgtattaataatcatcaaaatgaaattgtgtgattaaaaatgatcttcttgtgtcaaattttcatgtgacattgttaagggtgattat |
15858939 |
T |
|
| Q |
201 |
atatct--ctctttcgacaattgacatgatctcccctaatttcc |
242 |
Q |
| |
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||||| |||||| |||||||| ||||||| ||||||||||| |
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| T |
15858940 |
gtatctcgctcttttaacaattgaaatgatctaccctaatttcc |
15858983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 15858719 - 15858822
Alignment:
| Q |
3 |
tttccaagtttcaaatcctttcgaagagctcggactaagccaattataggtgggtataaccttagtacctcgtacagaatcatggtaacctatggaaaca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
15858719 |
tttccaagtttcaaatcctttcgaagagctcggttgaagtaaattaaaggtgggaataaccttagtacctcgtacaaaatcatggtaacctacagaaaca |
15858818 |
T |
|
| Q |
103 |
aaaa |
106 |
Q |
| |
|
|||| |
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| T |
15858819 |
aaaa |
15858822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 15865787 - 15865890
Alignment:
| Q |
3 |
tttccaagtttcaaatcctttcgaagagctcggactaagccaattataggtgggtataaccttagtacctcgtacagaatcatggtaacctatggaaaca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
15865787 |
tttccaagtttcaaatcctttcgaagagctcggttgaagtaaattaaaggtgggaataaccttagtacctcatacaaaatcatggtaacctataaaaaca |
15865886 |
T |
|
| Q |
103 |
aaaa |
106 |
Q |
| |
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|||| |
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|
| T |
15865887 |
aaaa |
15865890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 15844584 - 15844688
Alignment:
| Q |
3 |
tttccaagtttcaaatcctttcgaagagctcggactaagccaattataggtgggtataaccttagtacctcgtacagaatcatggtaacc--tatggaaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| ||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
15844584 |
tttccaagtttcaaatccttttgaacagctcgattgaagtaaattacaggagggtataaccttagtacctcgtacaaaatcatggtaacctatatggaaa |
15844683 |
T |
|
| Q |
101 |
caaaa |
105 |
Q |
| |
|
||||| |
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|
| T |
15844684 |
caaaa |
15844688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 15859023 - 15859084
Alignment:
| Q |
293 |
ttcatctccgacctaggtcgacttactttatacaaggttcgaaccagaaacctcaaatttga |
354 |
Q |
| |
|
||||||||| ||||||||| ||||| ||| |||||||||| ||||||||| ||||||||||| |
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|
| T |
15859023 |
ttcatctcctacctaggtcaacttattttttacaaggttcaaaccagaaaactcaaatttga |
15859084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 15859173 - 15859246
Alignment:
| Q |
357 |
tcaccccttttatatcagtaaagagagagatagatacaaaacttcatgtactaaaatcatttgaaatttaaaca |
430 |
Q |
| |
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|||||||||| |||||||| |||||| ||||| |||||||||| ||||| ||| |||||||||||||| |||| |
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| T |
15859173 |
tcacccctttaatatcagtgaagagaaagataaatacaaaactacatgtgataagatcatttgaaatttgaaca |
15859246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 30404400 - 30404355
Alignment:
| Q |
51 |
ggtgggtataaccttagtacctcgtacagaatcatggtaacctatg |
96 |
Q |
| |
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||||||||||||||||||||||| || |||||||| || ||||||| |
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|
| T |
30404400 |
ggtgggtataaccttagtacctcatagagaatcattgtcacctatg |
30404355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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