View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1401_low_16 (Length: 447)
Name: NF1401_low_16
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_16 |
 | |
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| [»] chr1 (8 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr8 (5 HSPs) |
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| [»] chr5 (5 HSPs) |
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| [»] chr7 (8 HSPs) |
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| [»] scaffold0251 (1 HSPs) |
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| [»] scaffold0408 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 78 - 447
Target Start/End: Original strand, 44489446 - 44489815
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44489446 |
agggtgaaaggtatctcgcacgggaagaagctgagccttaaaaatttgacattgtctatgccgggggaacaaaacgagtggttttggtcagaagtgaata |
44489545 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcct |
277 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
44489546 |
tatccggtcttaatcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatggcatgaggagaccagcagcct |
44489645 |
T |
|
| Q |
278 |
ccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacc |
377 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| |
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|
| T |
44489646 |
ccatctactggttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccatcactgggagactccttcctgatagagagttaacc |
44489745 |
T |
|
| Q |
378 |
cgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggagatga |
447 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
44489746 |
cgtgaggaggggctagagatgatgcaggcggacctactgtttacagaggaggctgccgttaaggagatga |
44489815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 78 - 447
Target Start/End: Original strand, 48998093 - 48998462
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
48998093 |
agggtgaaatgtatcttgcacgggaagaagctgagccttaaaaacttgacattgcctatgccgggggaacaaaacgagtggttttggtaagaagtgaata |
48998192 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcct |
277 |
Q |
| |
|
| |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||| | |
|
|
| T |
48998193 |
tgtttggtcttactcccctcctgactagtgggcgcgagaacatctttcacgggtttgtttgtgcgatgacagagagatggcatgaggagaccaacagctt |
48998292 |
T |
|
| Q |
278 |
ccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacc |
377 |
Q |
| |
|
|||||||| | || | ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
48998293 |
ccatctaccggttagggagatgaccatcacactagataatgtggcgtgtctcctgggcatcctcgtcactgggaggctccttcccgatagagagttaacc |
48998392 |
T |
|
| Q |
378 |
cgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggagatga |
447 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48998393 |
cgtgaggaggggctagagatgatgcaggcggacctactgtttacagaggaggctgccgctaaggagatga |
48998462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 78 - 238
Target Start/End: Original strand, 50908654 - 50908814
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
50908654 |
agggtgaaaggtatctcacacgggaagaagctgagccttaaaaacttgacattgcctatgccgggggaagaaaacgagtggttttggtcagaagtgaata |
50908753 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttg |
238 |
Q |
| |
|
| || |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
50908754 |
tgtccagtctcactcccctcctgactagtgggtacgagaacatctctcacgggtttgtttg |
50908814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 72 - 443
Target Start/End: Complemental strand, 43783949 - 43783573
Alignment:
| Q |
72 |
aagcaaagggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaag |
171 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| |||| ||||| ||||||| ||| || |||||| | |||||| | |||||| |||| |
|
|
| T |
43783949 |
aagcatagggtgaaaggtgtctcgcacgggaagaagttgagccttaataacttgatatttcctcagccgggtgcacaaaataatcagttttgggacgaag |
43783850 |
T |
|
| Q |
172 |
tgaatataaccggtcttactcccc-----tcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggag |
266 |
Q |
| |
|
||||| |||||||||| |||| |||||| || ||||||||||||||||||||||||||| |||||||| || || ||||||| ||||| ||| |
|
|
| T |
43783849 |
tgaatgcttccggtcttacccccccgccctcctgaatattgggtacgagaacatctctcacgggttcgtttgtgccttgtcagagagatggcatgaagag |
43783750 |
T |
|
| Q |
267 |
accagcagcctccatctac-tgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgat |
365 |
Q |
| |
|
|||||||| ||||||||| |||| || ||||||||||||| |||||||||||||||||||||| | ||||||||| ||| ||||||||| |||| ||| |
|
|
| T |
43783749 |
accagcagtttccatctacctgttgggggagatgaccatcagactagatgatgtggcgtgtctcataggcatccccatcattgggaggctccttcatgat |
43783650 |
T |
|
| Q |
366 |
agagagttaacccgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
|||||| |||||||||| |||| | || |||||||||||| || ||||| ||||| | ||||||||| ||||||||| |
|
|
| T |
43783649 |
agagagctaacccgtgatgaggagatacagatgatgcaggaagatctact-tttaccgcggaggctgctgctaaggag |
43783573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 218 - 389
Target Start/End: Complemental strand, 3376997 - 3376826
Alignment:
| Q |
218 |
catctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatcacactagatgat |
317 |
Q |
| |
|
||||||||||||||| ||||| | || || | ||||| ||||||||||||| || | ||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
3376997 |
catctctcacgggttcgtttggaccttgtcagatagatggcatgaggagaccaacaacttccatctacctgttggggagatgaccatcacactagatgat |
3376898 |
T |
|
| Q |
318 |
gtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacccgtgaagagggg |
389 |
Q |
| |
|
||||||||||| || |||||||| ||||||| ||||| |||| ||||||||| |||| ||||| |||||| |
|
|
| T |
3376897 |
gtggcgtgtcttctaagcatccccatcactggaaggctccttcatgatagagagctaactcgtgacgagggg |
3376826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 206 - 343
Target Start/End: Original strand, 28444640 - 28444776
Alignment:
| Q |
206 |
tgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatc |
305 |
Q |
| |
|
||||||||| |||||||| |||||||| || || | ||| | ||||||||||| |||||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
28444640 |
tgggtacgacaacatctcccacgggttagtgtgagacatggctgagagatgacattaggagaccagcagcttccatcttcctgttggagagatgaccatc |
28444739 |
T |
|
| Q |
306 |
acactagatgatgtggcgtgtctcctgggcatccccgt |
343 |
Q |
| |
|
||||| ||||||||||| |||||||| | ||||||||| |
|
|
| T |
28444740 |
acact-gatgatgtggcttgtctcctagacatccccgt |
28444776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 33297844 - 33297785
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatg |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
33297844 |
agggtgaaaggtatctcgcacgggaagaagctgagctttaaaaacttgacattgcctatg |
33297785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 49032045 - 49031981
Alignment:
| Q |
206 |
tgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagacca |
270 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||| ||| | ||||||| ||| ||||||||| |
|
|
| T |
49032045 |
tgggtacgagaacatctcccacgggttagtgtgtgccatggctgagagatggcatcaggagacca |
49031981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 78 - 447
Target Start/End: Original strand, 28034631 - 28035000
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
28034631 |
agggtgaaaggtatcttgcacgggaagaagccgagccttaaaaacttgacattgcctatgccgggggaacaaaacgagtggttttggtcagaagcgaata |
28034730 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcct |
277 |
Q |
| |
|
| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | |
|
|
| T |
28034731 |
tgtccgatcttactcccctcctgactagtgggtacgagaacatctctcacgggtttgtttgtgcgatgacagagagatggcatgaggagaccagcagctt |
28034830 |
T |
|
| Q |
278 |
ccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacc |
377 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||| || ||||||||||||| ||||||| |
|
|
| T |
28034831 |
ccatctaccggttggggagatgaccatcacactagatgatgtgccgtgtctcctgggcatcctcatcactgggagactccttcccgatagagtgttaacc |
28034930 |
T |
|
| Q |
378 |
cgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggagatga |
447 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28034931 |
cgtgaggaggggctagagatgatgcaggcgaacctactgtttacagaggaggctgccgctaaggagatga |
28035000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 78 - 443
Target Start/End: Complemental strand, 31118125 - 31117760
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||| | || ||| ||| | |||||| || || |||||| | ||||||||| |
|
|
| T |
31118125 |
agggtgaaaggtatctcgtacgggaagaagctgagccttaaaaacttgatactgcctacaccgagaatacaaaatgaatggttttgggaaaaagtgaata |
31118026 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcct |
277 |
Q |
| |
|
| ||||||||||||||||| | |||| ||||||||||||||||||||||||||| | |||| | ||| || |||||||||||||||||||||||| | | |
|
|
| T |
31118025 |
tgtccggtcttactcccctcttaactagtgggtacgagaacatctctcacgggttcgcttgtacaatgtcagagagatgacatgaggagaccagcaactt |
31117926 |
T |
|
| Q |
278 |
ccatctac-tgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaac |
376 |
Q |
| |
|
||||||| |||| || |||||||||||||||||||||||| || | |||||||| ||||||||| |||| |||||| |||||| |||||||||||| | |
|
|
| T |
31117925 |
tcatctacctgttagg-gagatgaccatcacactagatgatatgacatgtctcctaggcatccccatcacatggaggcctcttcctgatagagagttacc |
31117827 |
T |
|
| Q |
377 |
ccgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
|| ||| ||||| || |||||||||||| ||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
31117826 |
ccatgagaaggggataaagatgatgcaggtggacctactttttacagcggaggctgtcgctaaggag |
31117760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 79 - 443
Target Start/End: Complemental strand, 18205676 - 18205313
Alignment:
| Q |
79 |
gggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaatat |
178 |
Q |
| |
|
|||||||| || ||||||||||||| |||||||| ||||| ||||||| |||| | |||||| | |||||| | || |||||| |||| |||| |
|
|
| T |
18205676 |
gggtgaaatgtgtctcgcacgggaaaaagctgagccttaataacttgatattgcatcagccgggtgcacaaaataactggttttgggacgaagagaatgc |
18205577 |
T |
|
| Q |
179 |
aaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctc |
278 |
Q |
| |
|
|||||||||| |||||||||| || | ||| |||||| |||||||| | ||| |||||||| || || ||||||||||||||||||||| || | || |
|
|
| T |
18205576 |
ttccggtcttac-cccctcctgaatactaggtccgagaagatctctcatgtgttcgtttgtgccttgtcagagagatgacatgaggagaccaacaacttc |
18205478 |
T |
|
| Q |
279 |
catctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaaccc |
378 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||| |||||| || ||||||||| ||||| |||||| |||| ||||||||||||| | |
|
|
| T |
18205477 |
catctacatgttggggagatgaccatcacactagatgatgtggtgtgtcttctaggcatccccatcactaggaggccccttcattatagagagttaactc |
18205378 |
T |
|
| Q |
379 |
gtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
|||| ||||| || |||||||||||| ||||||||| ||||||| ||| ||||| |||||||| |
|
|
| T |
18205377 |
gtgatgagggaatatagatgatgcaggaggacctactttttacagcggatgctgctactaaggag |
18205313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 349
Target Start/End: Original strand, 941263 - 941406
Alignment:
| Q |
206 |
tgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatc |
305 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||| ||| ||||||| ||| | |||||||||||| ||||||| | |||| |||||||||||| |
|
|
| T |
941263 |
tgggtacgagaacatctcccacgggttagtgtgtgccatggttgagagatggcatcaagagaccagcagcttccatctgcctgttggggagatgaccatc |
941362 |
T |
|
| Q |
306 |
acactagatgatgtggcgtgtctcctgggcatccccgtcactgg |
349 |
Q |
| |
|
||||| |||||||| || |||||||| | |||||||||| |||| |
|
|
| T |
941363 |
acactggatgatgttgcttgtctcctagacatccccgtcgctgg |
941406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 79 - 447
Target Start/End: Complemental strand, 37228955 - 37228587
Alignment:
| Q |
79 |
gggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaatat |
178 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
37228955 |
gggtgaaaggtatctcgcacgagaagaagctgaggcttaaaaacttgacattgcctatgctggggaaacaaaacgagtggttttggtcagaagtgaatat |
37228856 |
T |
|
| Q |
179 |
aaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctc |
278 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| | || |
|
|
| T |
37228855 |
gtccggtcttactcccctcctgactagtgggtacgagaacatctctcacgggtttgtttgtgcgatgacagagagatggcatgaggagaccagcaacttc |
37228756 |
T |
|
| Q |
279 |
catctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaaccc |
378 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37228755 |
catctactggttggggagatgaacatcacactagatgatgtggtgtgtctcctgggcattcccatcactgggaggctccttcccgatagagagttaaccc |
37228656 |
T |
|
| Q |
379 |
gtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggagatga |
447 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
37228655 |
gtgaagaggggctaaagatgatgcaagcggacctactgtatacagaggaggctgctgctaaggagatga |
37228587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 78 - 443
Target Start/End: Original strand, 14095996 - 14096358
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| || || ||| ||||| ||||||||| |
|
|
| T |
14095996 |
agggtgaaaggtatctcgcacgggaagaagctgagccttaaaaacttgacattgcctatgctgggggaacaaaatgactggttt-ggtcataagtgaata |
14096094 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcct |
277 |
Q |
| |
|
| ||||||||||||| |||||||||| |||||| |||||||| |||||||| || ||||||||||||||| ||||||| ||||||||||| |||| | | |
|
|
| T |
14096095 |
tgtccggtcttactcctctcctgactagtgggtatgagaacatatctcacggattcgtttgtgcgatgacagagagatggcatgaggagacaagcaactt |
14096194 |
T |
|
| Q |
278 |
ccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacc |
377 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||| || ||||| |||| |||||||||| |
|
|
| T |
14096195 |
ccatctacctgttggggagatgaccatcacactagatgatgtgac--gtctcctacgcatccccatcactgggagactccttcctgataaagagttaacc |
14096292 |
T |
|
| Q |
378 |
cgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14096293 |
cacgaggaggggctagagatgatgcaggcggacctactatttacagaggaggatgccgctaaggag |
14096358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 349
Target Start/End: Original strand, 9385934 - 9386077
Alignment:
| Q |
206 |
tgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatc |
305 |
Q |
| |
|
|||||||||||||||||| ||||| || || ||||| ||| | ||||||| ||| | |||||||||||| ||||||| | |||| |||||||||||| |
|
|
| T |
9385934 |
tgggtacgagaacatctcccacggattagtgtgtgccatggctgagagatggcatcaagagaccagcagcttccatctgcctattggggagatgaccatc |
9386033 |
T |
|
| Q |
306 |
acactagatgatgtggcgtgtctcctgggcatccccgtcactgg |
349 |
Q |
| |
|
||||| |||||||| | |||||||| | |||||||||| |||| |
|
|
| T |
9386034 |
acactggatgatgttacttgtctcctagacatccccgtcgctgg |
9386077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 341
Target Start/End: Original strand, 22722597 - 22722756
Alignment:
| Q |
181 |
ccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctcca |
280 |
Q |
| |
|
|||||||||| |||||||| | | ||||||||| ||||||||||||||| | |||||||| |||| ||||||| || |||||||||||| | |||| |
|
|
| T |
22722597 |
ccggtcttac-cccctccttaagactgggtacgaaaacatctctcacgggctagtttgtgctttgacggagagatggtataaggagaccagcaacttcca |
22722695 |
T |
|
| Q |
281 |
tctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatcccc |
341 |
Q |
| |
|
| | || |||| |||| ||| |||||||||| || |||||||||| || | ||||||| |
|
|
| T |
22722696 |
tttgcttgttgggaagataaccgtcacactagacaatatggcgtgtcttctcgacatcccc |
22722756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 15910717 - 15910678
Alignment:
| Q |
289 |
ttggagagatgaccatcacactagatgatgtggcgtgtct |
328 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15910717 |
ttggggagatgaccgtcacactagatgatgtggcgtgtct |
15910678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 80 - 447
Target Start/End: Original strand, 13273143 - 13273510
Alignment:
| Q |
80 |
ggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaatata |
179 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
13273143 |
ggtgaaagatatctcgcacgggaagaagctgagccttaaaaacttgacattgcctattccgggggaacaaaaccagtggttttggtcagaagtgaatatg |
13273242 |
T |
|
| Q |
180 |
accggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctcc |
279 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| ||| |
|
|
| T |
13273243 |
tccggtcttactcccctcctgactagtgggtacgagaacatctctcacgggtttgtttgtgcgatgacagagagatggcatgaggagaccaacagcttcc |
13273342 |
T |
|
| Q |
280 |
atctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacccg |
379 |
Q |
| |
|
|||| | | |||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13273343 |
atctgccggttggggagatgaccatcacactagatgatgtggcgtgtctcctgggcatctccatcactgggaggctcattcccgatagagagttaacccg |
13273442 |
T |
|
| Q |
380 |
tgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggagatga |
447 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
13273443 |
tgaggaggggctagagatgatgtaggcggacctactgtttacagaggaggcttccgctaaggagatga |
13273510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 78 - 447
Target Start/End: Original strand, 2741980 - 2742351
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaaca--aaacgagtgattttggtcagaagtgaa |
175 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||| |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
2741980 |
agggtgaaaggtatctcgcacgggaaaaagctgagccttaaaaacttgacactgcctatgtcgggggaacacaaaacgagtggttttggtcagaagtgaa |
2742079 |
T |
|
| Q |
176 |
tataaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagc |
275 |
Q |
| |
|
||| |||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| | |
|
|
| T |
2742080 |
tatgtccggtcttactcttctcttgactagtgggtacgagaacatctctcacgggtttgtttgtgcgatgacagatagatggcatgaggagaccagcaac |
2742179 |
T |
|
| Q |
276 |
ctccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaa |
375 |
Q |
| |
|
||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||| |
|
|
| T |
2742180 |
ttccatctacgggttggggagatgaccatcatactagatgatgtggcgtgtctcctgggcatccccatgactgggaggctccttcccgatagaaagttaa |
2742279 |
T |
|
| Q |
376 |
cccgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggagatga |
447 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2742280 |
cccgtgaagaggggttagagatgatgcaggcaggcctactttttacagaggaggctgccgctaaggagatga |
2742351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 6704154 - 6704253
Alignment:
| Q |
250 |
agagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgg |
349 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||| | |||| ||||| ||||||||||| ||||||||||| |||||||| | ||||| |||| |||| |
|
|
| T |
6704154 |
agagatggcatcaggagaccagcagcttccatctgcctgttggggagataaccatcacactggatgatgtggcttgtctcctagacatcctcgtcgctgg |
6704253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 24210135 - 24210096
Alignment:
| Q |
289 |
ttggagagatgaccatcacactagatgatgtggcgtgtct |
328 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24210135 |
ttggggagatgaccatcacactagatgatgtggcatgtct |
24210096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 20942937 - 20943003
Alignment:
| Q |
289 |
ttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggct |
355 |
Q |
| |
|
|||| ||||||||| |||||||||||||| |||| ||||| || | ||||||| |||||||||||| |
|
|
| T |
20942937 |
ttggggagatgaccgtcacactagatgatttggcatgtcttctagacatcccctgcactgggaggct |
20943003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 80 - 447
Target Start/End: Original strand, 38456476 - 38456843
Alignment:
| Q |
80 |
ggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaatata |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38456476 |
ggtgaaaggtatctcgcacgggaagaagctgagccttaaaaacttgacattgcctatgccggggtaacaaaacgagtggttttggtcagaagtgaatata |
38456575 |
T |
|
| Q |
180 |
accggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctcc |
279 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||| ||||||| |||||||||| | ||||| ||| |
|
|
| T |
38456576 |
ttcggtcttactcccctcctgactagtggatacaagaacatctctcacatgtttgtttgtgcgatgacagagagatggcatgaggagatcggcagcttcc |
38456675 |
T |
|
| Q |
280 |
atctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacccg |
379 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38456676 |
atctaccagttggggagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccatcactgggaggctccttcccgatagagagttaacccg |
38456775 |
T |
|
| Q |
380 |
tgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggagatga |
447 |
Q |
| |
|
||| ||||||||| ||||||||||||| |||||||| ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
38456776 |
tgaggaggggctatagatgatgcaggcagacctactgtttacggaggaggctaccgctaaagagatga |
38456843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 99 - 443
Target Start/End: Complemental strand, 21063619 - 21063277
Alignment:
| Q |
99 |
gggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaatataaccggtcttactcccctcc |
198 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| || | ||| | ||||||| | || |||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
21063619 |
gggaagaagttgagccttaaaaacttgatattgcctcagttgggtgcacaaaaccaatggttttgggacgaagtgaatgcttccggtcttac-cccctcc |
21063521 |
T |
|
| Q |
199 |
tgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccatctactgtttggagagat |
298 |
Q |
| |
|
| | || ||||||||||||||||| ||||||||| |||||||| || || ||||||||||| |||||||||||| | ||||||||| || | ||||| |
|
|
| T |
21063520 |
taaatagtgggtacgagaacatctttcacgggttcgtttgtgccctgtcacagagatgacatcaggagaccagcatcttccatctacctattagggagat |
21063421 |
T |
|
| Q |
299 |
gaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacccgtgaagaggggctagagatg |
398 |
Q |
| |
|
|| ||||||||||||||| ||| ||||||||| ||||| ||| ||||||||||||| |||| |||||||||||||| ||||| |||||| || ||||| |
|
|
| T |
21063420 |
gaacatcacactagatgacatggtgtgtctcctaggcat-cccatcactgggaggctccttcatgatagagagttaactcgtgatgaggggatacagatg |
21063322 |
T |
|
| Q |
399 |
atgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
|| || | ||||||||| |||| || ||||||||| | ||||||| |
|
|
| T |
21063321 |
atacatgaggacctactttttatagcggaggctgctgttaaggag |
21063277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 349
Target Start/End: Complemental strand, 8523572 - 8523432
Alignment:
| Q |
209 |
gtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatcaca |
308 |
Q |
| |
|
|||||| |||||||| |||||||| || ||| ||| | ||||||| ||| ||||||||| |||| ||||||| | |||| ||||||||||||||| |
|
|
| T |
8523572 |
gtacgacaacatctcccacgggttagtgtgtctcatggctgagagatggcatcaggagaccaacagcttccatctgcctattggggagatgaccatcaca |
8523473 |
T |
|
| Q |
309 |
ctagatgatgtggcgtgtctcctgggcatccccgtcactgg |
349 |
Q |
| |
|
|| |||||||| || |||||||| |||||||||||| |||| |
|
|
| T |
8523472 |
ctggatgatgttgcttgtctccttggcatccccgtcgctgg |
8523432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 12626556 - 12626679
Alignment:
| Q |
184 |
gtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccatct |
283 |
Q |
| |
|
||||||| |||||||||| || ||||||||| |||| ||||||| |||||||||||| || | |||||| |||||||||||||||| | ||||||| |
|
|
| T |
12626556 |
gtcttacccccctcctgaatagtgggtacgataacagctctcacatgtttgtttgtgccttgttagagagatagcatgaggagaccagcaacttccatct |
12626655 |
T |
|
| Q |
284 |
actgtttggagagatgaccatcac |
307 |
Q |
| |
|
|| |||| |||||||||||||| |
|
|
| T |
12626656 |
acatgttggggagatgaccatcac |
12626679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 327
Target Start/End: Complemental strand, 15825407 - 15825261
Alignment:
| Q |
181 |
ccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctcca |
280 |
Q |
| |
|
|||||||||| | |||||| | | ||||||| | ||||||||||||||| | ||||| || |||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
15825407 |
ccggtcttaccctcctccttaagactgggtacaaaaacatctctcacggggtagtttgggccttgactgagagatgacatgaggagaccaacagcttcca |
15825308 |
T |
|
| Q |
281 |
tctactgt-ttggagagatgaccatcacactagatgatgtggcgtgtc |
327 |
Q |
| |
|
|| | | | | || ||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
15825307 |
tc-agtatgtgggggagatgaccgtcacactagataatgtggtgtgtc |
15825261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 13610094 - 13610160
Alignment:
| Q |
289 |
ttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggct |
355 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| || | |||||| ||||||||||||| |
|
|
| T |
13610094 |
ttggggagatgactgtcacactagatgatgtggcgtgtcttctagatatccccatcactgggaggct |
13610160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 12626452 - 12626500
Alignment:
| Q |
80 |
ggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgaca |
128 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||| ||||||||| |
|
|
| T |
12626452 |
ggtgaaaggtgtcttgcacgggaagaagctgagccttaataacttgaca |
12626500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 13692841 - 13692901
Alignment:
| Q |
295 |
agatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggct |
355 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| || | |||||| ||||||||||||| |
|
|
| T |
13692841 |
agatgactgtcacactagatgatttggcgtgtcttctagatatccccatcactgggaggct |
13692901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 78 - 443
Target Start/End: Complemental strand, 6286953 - 6286588
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
6286953 |
agggtgaaaggtatctcgcacgggaagaagctgagcattaaaaacttgacattgcctatgcctggggaacaaaatgagtggttttggttagaagtgaata |
6286854 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcct |
277 |
Q |
| |
|
| | |||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| | |
|
|
| T |
6286853 |
tgtctggtcttactccctttctgattagtgggtacgagaacatctctcacgggtttgtttgtgcgatgacagagagatgacatgaggagatcaacagctt |
6286754 |
T |
|
| Q |
278 |
ccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacc |
377 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||||| || |||| |||| |||||||||| |
|
|
| T |
6286753 |
ccatctactggttggggagatgaccatcacaatagatgatgtggcgtgtctcctaggcatccccatcaatgggagactccttctagataaagagttaacc |
6286654 |
T |
|
| Q |
378 |
cgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||| ||||||| ||||||||| | ||||||| |
|
|
| T |
6286653 |
cgtgaggaggggctagagatgatgcagacagacctactttttacagtggaggctgctggtaaggag |
6286588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 78 - 443
Target Start/End: Original strand, 35013357 - 35013722
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
35013357 |
agggtgaaaggtatctcgcacgggaagaagctgagccttaaaaacttgacatttcctatgatgggggaacaaaacgagtggttttggtcagaaatgaata |
35013456 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcct |
277 |
Q |
| |
|
| |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||| | ||||||| |||||||||||||||| | | |
|
|
| T |
35013457 |
tgtccggtcttactccccttctgactagtgggtacgagaacatttctcacgggtttgtttgtgcaatgagagagagatggcatgaggagaccagcaactt |
35013556 |
T |
|
| Q |
278 |
ccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacc |
377 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| || ||| | |||| |||||||||| |
|
|
| T |
35013557 |
ccatctaccggttggggagatgaccatcacactagatgatgtggcgtgtctcctaggcatccccatcattgggagactcctttcggataaagagttaacc |
35013656 |
T |
|
| Q |
378 |
cgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
||||| |||| |||||||||||||||| | ||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
35013657 |
cgtgaggaggcgctagagatgatgcagacaaacctactttttacagcggaggctgccggtaaggag |
35013722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 341
Target Start/End: Original strand, 2028836 - 2028971
Alignment:
| Q |
206 |
tgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatc |
305 |
Q |
| |
|
||||||||| | |||||||||||| | |||||||| || | ||||||| |||||||||||||||||| ||||||| | |||| ||||||||| || |
|
|
| T |
2028836 |
tgggtacgaaagtatctctcacgggctagtttgtgctttggctgagagatggcatgaggagaccagcagcttccatctgcctgttggcgagatgaccgtc |
2028935 |
T |
|
| Q |
306 |
acactagatgatgtggcgtgtctcctgggcatcccc |
341 |
Q |
| |
|
||||||||||||||||| ||||| || | ||||||| |
|
|
| T |
2028936 |
acactagatgatgtggcttgtcttctagacatcccc |
2028971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 78 - 443
Target Start/End: Complemental strand, 18199 - 17835
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| |||||||||||||| || ||||||||||||||||||| ||||| ||| ||| ||||||||||| |
|
|
| T |
18199 |
agggtgaaaggtatctcgcacgagaagtagctgagccttaaaaacttgaccatgcctatgccgggggaacaaaatgagtggtttcggtaagaagtgaata |
18100 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcct |
277 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| || ||| ||| |||||||||||||||| | | |
|
|
| T |
18099 |
tgtccggtcttactcccctcctgactagtgggtacgagaacatctctcacgggttcgtttgtgcgatgccagagaaatggcatgaggagaccagcaactt |
18000 |
T |
|
| Q |
278 |
ccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacc |
377 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
17999 |
ccatctacctaatggggagatgaccctcacacttgatgatgtggcgtgtctcctaggcatccccatcact-ggaggctccttcccgatagagagttaacc |
17901 |
T |
|
| Q |
378 |
cgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
| ||| |||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
17900 |
catgacgaggggctagagatgatggaggcagacctactttttacagcggaggctgccgctaaggag |
17835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 78 - 443
Target Start/End: Original strand, 6338 - 6700
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| || || ||| ||||| ||||||||| |
|
|
| T |
6338 |
agggtgaaaggtatctcgcacgggaagaagctgagccttaaaaacttgacattgcctatgctgggggaacaaaatgactggttt-ggtcataagtgaata |
6436 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcct |
277 |
Q |
| |
|
| ||||||||||||| |||||||||| |||||| |||||||| |||||||| || ||||||||||||||| ||||||| ||||||||||| |||| | | |
|
|
| T |
6437 |
tgtccggtcttactcctctcctgactagtgggtatgagaacatatctcacggattcgtttgtgcgatgacagagagatggcatgaggagacaagcaactt |
6536 |
T |
|
| Q |
278 |
ccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacc |
377 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||| || ||||| |||| |||||||||| |
|
|
| T |
6537 |
ccatctacctgttggggagatgaccatcacactagatgatgtgac--gtctcctacgcatccccatcactgggagactccttcctgataaagagttaacc |
6634 |
T |
|
| Q |
378 |
cgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6635 |
cacgaggaggggctagagatgatgcaggcggacctactatttacagaggaggatgccgctaaggag |
6700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 78 - 443
Target Start/End: Complemental strand, 32309001 - 32308636
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
32309001 |
agggtgaaaggtatctcgcacgggaagaaagtgagctttaaaaacttgacattgcctatgccgggggaacaaaacgagtggttttagtcagaagtgaata |
32308902 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcct |
277 |
Q |
| |
|
| |||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || | | |
|
|
| T |
32308901 |
tgtccggtcttacaacccttctgactagtgggtatgagaacatctctcacgggtttgtttgtgcgatgacagggagatggcatgaggagaccaacaactt |
32308802 |
T |
|
| Q |
278 |
ccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacc |
377 |
Q |
| |
|
|||||||| |||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||| || ||||| |||| |||||||||| |
|
|
| T |
32308801 |
ccatctaccaattggggagatgaccatcagactagatgatgtggtgtgtctcctaggcatccccatcactgggagactccttccggataaagagttaacc |
32308702 |
T |
|
| Q |
378 |
cgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
|||| ||||||||| |||| ||| || | |||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
32308701 |
tgtgaggaggggctaaagataatggagacagacctactttttacagcggaggctgccggtaaggag |
32308636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 82 - 443
Target Start/End: Complemental strand, 42706366 - 42706006
Alignment:
| Q |
82 |
tgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaatataac |
181 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||| || ||| ||| ||||||||||| ||||| |||||||||||||||||||| | |
|
|
| T |
42706366 |
tgaaaggtatctcgcacgggaagaaattgagccttaaaaacttgaccatgcctaagccaggggaacaaaatgagtggttttggtcagaagtgaatatgtc |
42706267 |
T |
|
| Q |
182 |
cggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccat |
281 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||| |||| | ||||||||| ||| ||||||| ||||||||||||| |||| ||| | |
|
|
| T |
42706266 |
cggtcttacacccctcctgactaatgggtacgagaacatatctcacaggttcgcttgtgcgataacagagagatggcatgaggagaccaacagcttcctt |
42706167 |
T |
|
| Q |
282 |
ctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacccgtg |
381 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||| |||| |||| ||||||||| |||| |
|
|
| T |
42706166 |
ctacttgttggggagatgaccatcacactagatgatgtggcgtgtctcctaggcat-cccatcattgggaggctcgttcctgataaagagttaacacgtg |
42706068 |
T |
|
| Q |
382 |
aagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
42706067 |
gtgaggggcaagagatgatgcaggcgcacctactttttacagcggaggctgccgctaaggag |
42706006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 78 - 247
Target Start/End: Original strand, 39464366 - 39464535
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39464366 |
agggtgaaaggtatcttgcacgagaagaaactgagccttaaaaacttgacattgcctatgccgggggaacaaaacgagtgattttggttagaagtgaata |
39464465 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgac |
247 |
Q |
| |
|
| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39464466 |
tgtctggtcttactcccctcctgactagtgggtacgagaacatctctcacgggtttgtttgtgcgatgac |
39464535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 294 - 447
Target Start/End: Original strand, 39464551 - 39464704
Alignment:
| Q |
294 |
gagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacccgtgaagaggggctag |
393 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
39464551 |
gagatgaccatcccactagatggtgtggcgtgtctcctgggcttccccatcactgggaggctccttcccgatagagagtttacccgtgaggaggggctag |
39464650 |
T |
|
| Q |
394 |
agatgatgcaggcggacctactatttacagaggaggctgccgctaaggagatga |
447 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39464651 |
agatgatgcagatggacctactgtttacagaggaggctgccgctaaggagatga |
39464704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 31813206 - 31813150
Alignment:
| Q |
289 |
ttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtca |
345 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
31813206 |
ttggggagatgaccgtcacactagatgatgtggcgtgtcttctacacatccccgtca |
31813150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 38650881 - 38650957
Alignment:
| Q |
252 |
agatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtct |
328 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| | |||| ||||| | | |||||||||| |||||||||||||| |
|
|
| T |
38650881 |
agatggcatgaggagaccagcagcttccatctgcctgttggggagattatcgtcacactagacgatgtggcgtgtct |
38650957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 632936 - 632889
Alignment:
| Q |
294 |
gagatgaccatcacactagatgatgtggcgtgtctcctgggcatcccc |
341 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| | ||||||| |
|
|
| T |
632936 |
gagatgaccatcacactggatgatgtggcttgtctcctagacatcccc |
632889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 78 - 443
Target Start/End: Complemental strand, 33399 - 33035
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |||||||||||||||||| || ||||||||| |||||| || || ||||||||||||||||||| |
|
|
| T |
33399 |
agggtgaaaggtaactcgcacgggaagaagttgagccttaaaaacttgacattgcctctgccggggggacaaaatgactggttttggtcagaagtgaata |
33300 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcct |
277 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| || | ||||| |||||||||| | || | | |
|
|
| T |
33299 |
tgtccggtcttactcccctcctgactagtgggtacgagaacatctctcacggattcctttgtgcgatatcagatagatggcatgaggagagtatcaactt |
33200 |
T |
|
| Q |
278 |
ccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacc |
377 |
Q |
| |
|
| |||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
33199 |
cgatctacctgttggggagatgaccatcacactagatgacgtggcgtgtctcctaggcat-accatcactgggaggctccttcctgatagagagttaact |
33101 |
T |
|
| Q |
378 |
cgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
| ||| || ||| || |||||||||||| ||||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
33100 |
catgaggaagggatatagatgatgcaggtggacctactgtttacagaagaggctgctgctaaggag |
33035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 8e-68; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 78 - 268
Target Start/End: Complemental strand, 1599543 - 1599353
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| ||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
1599543 |
agggtgaaaggtatctcgcacgggaaaaagctgagccttaaaaacttgaccatgcctatgtcggaggaacaaaatgagtggttttggtcagaagtgaata |
1599444 |
T |
|
| Q |
178 |
taaccggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagac |
268 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1599443 |
tgtccggtcttactcccctcctgactagtgggtactagaacatctctcacgggttcgtttgtgcgatgacagagagatgacatgaggagac |
1599353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 78 - 376
Target Start/End: Original strand, 12073075 - 12073374
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| ||||||| ||||| |||| ||| |||| | || |||||| | || |||||| ||||||||| |
|
|
| T |
12073075 |
agggtgaaaggtgtctcgcacgggaggaagctgagccttaaaaccttgatattgcctaagccgagagaccaaaaccaatggttttgggacgaagtgaatg |
12073174 |
T |
|
| Q |
178 |
taaccggtcttac-tcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcc |
276 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| ||| | ||||||||||||||| |||||||| || || ||||||| |||||||||||||||| | |
|
|
| T |
12073175 |
cttccggtcttacctcccctcctgaatagtgggtgcgaaagcatctctcacgggttcgtttgtgccttgtcagagagatggcatgaggagaccagcaact |
12073274 |
T |
|
| Q |
277 |
tccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaac |
376 |
Q |
| |
|
||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |||| ||||||||||||| |
|
|
| T |
12073275 |
tccatctacctgttggggaaatgaccatcacactagatgatgtggcgtgtctcctaggcatccccatcacggggaggctccttcttaatagagagttaac |
12073374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 253 - 443
Target Start/End: Original strand, 6776982 - 6777172
Alignment:
| Q |
253 |
gatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggag |
352 |
Q |
| |
|
|||| |||||||||||||||| | ||||||||| |||| ||||| || ||||||||||||||||||||||||| ||| ||||||||| ||| | |||| |
|
|
| T |
6776982 |
gatggcatgaggagaccagcatcttccatctacctgttggggagattactatcacactagatgatgtggcgtgtcacctaggcatccccatcatttggag |
6777081 |
T |
|
| Q |
353 |
gcttcttcccgatagagagttaacccgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
||| ||||||||||||||||||||| |||| |||||||||||||||||| | || |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
6777082 |
gctccttcccgatagagagttaacctgtgacgaggggctagagatgatgtaagcagacctactttttacagcggaggctgccgctaaggag |
6777172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 264 - 443
Target Start/End: Complemental strand, 1597286 - 1597107
Alignment:
| Q |
264 |
gagaccagcagcctccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccg |
363 |
Q |
| |
|
|||||||||| | ||||||||| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||| ||||| | |
|
|
| T |
1597286 |
gagaccagcaacttccatctacctattggggagatgaccatcacactagattatgtggcgtgtctcctaggcatccccatcactggaaggctccttcctg |
1597187 |
T |
|
| Q |
364 |
atagagagttaacccgtgaagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |||| |||||||| ||||||| | ||| ||||||||||||| |
|
|
| T |
1597186 |
atagagagttaacccgagacgaggggctagagatgatttaggcagacctactttttacagcgaaggttgccgctaaggag |
1597107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 182 - 443
Target Start/End: Original strand, 19196925 - 19197185
Alignment:
| Q |
182 |
cggtcttactcccctcctgactaatgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccat |
281 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| | |||||||||| || |||||||| || || ||||||| |||||||||||||||| | ||| | |
|
|
| T |
19196925 |
cggtcttac-cccctcctgaataatgggtacgatagcatctctcaccatttcgtttgtgccttgtcagagagatggcatgaggagaccagcaacttcctt |
19197023 |
T |
|
| Q |
282 |
ctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggcttcttcccgatagagagttaacccgtg |
381 |
Q |
| |
|
|||| |||| |||||||||| |||||||||| ||||||| |||||||| || |||||| ||||||||||||| |||| ||||||| ||||| |||| |
|
|
| T |
19197024 |
ctacctgttggggagatgaccaacacactagataatgtggcatgtctcctaggtatccccatcactgggaggctccttcataatagagatttaactcgtg |
19197123 |
T |
|
| Q |
382 |
aagaggggctagagatgatgcaggcggacctactatttacagaggaggctgccgctaaggag |
443 |
Q |
| |
|
| ||||| || |||||||| ||| ||||||||| ||||||| ||||| ||| |||||||| |
|
|
| T |
19197124 |
agaaggggatacagatgatgtaggaggacctactttttacagcggaggttgctactaaggag |
19197185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 206 - 340
Target Start/End: Complemental strand, 39687237 - 39687103
Alignment:
| Q |
206 |
tgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatc |
305 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||| ||| | ||||||| ||| |||||||||||| | ||||||| | | |||| |||||||||||| |
|
|
| T |
39687237 |
tgggtacgagaacatctcccacgggttagtgtgtgccatggctgagagatggcatcaggagaccagcatcttccatctgccggttggggagatgaccatc |
39687138 |
T |
|
| Q |
306 |
acactagatgatgtggcgtgtctcctgggcatccc |
340 |
Q |
| |
|
||||| ||||||||||| |||||||| | |||||| |
|
|
| T |
39687137 |
acactggatgatgtggcttgtctcctagacatccc |
39687103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 16255229 - 16255124
Alignment:
| Q |
250 |
agagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgg |
349 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||||||| | |||| ||||||||||||||| ||||||||||||||||||| || | |||||| ||||||| |
|
|
| T |
16255229 |
agagataacatgaggacaccagcagcttccatctgcctgttggggagatgaccatcacaatagatgatgtggcgtgtcttctagttatccccatcactgg |
16255130 |
T |
|
| Q |
350 |
gaggct |
355 |
Q |
| |
|
|||||| |
|
|
| T |
16255129 |
gaggct |
16255124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 7628325 - 7628445
Alignment:
| Q |
208 |
ggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatcac |
307 |
Q |
| |
|
||||||| ||||| |||||||| | |||| ||| || || |||||||||||||||| ||||||||| ||||||| || |||| |||||||| |||| |
|
|
| T |
7628325 |
ggtacgacaacatatctcacggactcgtttttgccttgtcagagagatgacatgaggacaccagcagcttccatctgcttgttgggtagatgaccgtcac |
7628424 |
T |
|
| Q |
308 |
actagatgatgtggcgtgtct |
328 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7628425 |
actagatgatgtggcgtgtct |
7628445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 229
Target Start/End: Complemental strand, 12071360 - 12071208
Alignment:
| Q |
78 |
agggtgaaaggtatctcgcacgggaagaagctgagacttaaaaacttgacattgtctatgccgggggaacaaaacgagtgattttggtcagaagtgaata |
177 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| ||||||| ||||| |||| ||| |||| | || |||||| | || |||||| ||||||||| |
|
|
| T |
12071360 |
agggtgaaaggtgtctcgcacgggaggaagctgagccttaaaaccttgatattgcctaagccgagagaccaaaaccaatggttttgggacgaagtgaatg |
12071261 |
T |
|
| Q |
178 |
taaccggtctta-ctcccctcctgactaatgggtacgagaacatctctcacgg |
229 |
Q |
| |
|
||||||||| |||||||||||| || ||||| ||| | ||||| |||||| |
|
|
| T |
12071260 |
cttccggtcttacctcccctcctgaatagtgggtgcgaaagcatctttcacgg |
12071208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 352
Target Start/End: Complemental strand, 24737938 - 24737836
Alignment:
| Q |
250 |
agagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatcacactagatgatgtggcgtgtctcctgggcatccccgtcactgg |
349 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||| || || | |||||| | ||||||||||||||||||| ||||| || | |||||| ||||||| |
|
|
| T |
24737938 |
agagatgacatgcggagaccagcaacttccatctgctcgttagggagatggtcgtcacactagatgatgtggcttgtcttctagatatccccatcactgg |
24737839 |
T |
|
| Q |
350 |
gag |
352 |
Q |
| |
|
||| |
|
|
| T |
24737838 |
gag |
24737836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 355
Target Start/End: Original strand, 21565064 - 21565213
Alignment:
| Q |
206 |
tgggtacgagaacatctctcacgggtttgtttgtgcgatgacatagagatgacatgaggagaccagcagcctccatctactgtttggagagatgaccatc |
305 |
Q |
| |
|
||||||||| | |||||| |||||||| || ||||| ||| | ||||||| ||| ||||||||| |||| ||||||| | || | ||||| |||||| |
|
|
| T |
21565064 |
tgggtacgacagcatctcccacgggttagtgtgtgctatggctgagagatggcatcaggagaccaacagcttccatcttccagttagggagataaccatc |
21565163 |
T |
|
| Q |
306 |
acactagatgatgtggcgtgtctcctgggcatccccgtcactgggaggct |
355 |
Q |
| |
|
||||| |||||||| || ||||| || || |||||| || |||| ||||| |
|
|
| T |
21565164 |
acacttgatgatgtagcttgtcttctaggtatccccatcgctggaaggct |
21565213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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