View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_19 (Length: 421)
Name: NF1401_low_19
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_19 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 929895 - 929746
Alignment:
| Q |
72 |
gtatcaaaggtgggaagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcattttgctaggtagaaatcaaattatctttg |
171 |
Q |
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| T |
929895 |
gtatcaaaggtggtaagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcatttttctaggtagaaatcaaattatctttg |
929796 |
T |
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| Q |
172 |
aaggaaactcaatgaatgtaagcggcatagtgtcgcatattaaaatggtt |
221 |
Q |
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| T |
929795 |
aaggaaactcaatgaatgtaagcggcatagtgtcgcatattaaaatggtt |
929746 |
T |
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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 311 - 390
Target Start/End: Complemental strand, 929441 - 929362
Alignment:
| Q |
311 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtttcttat |
390 |
Q |
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| T |
929441 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtcctaattgtgacttatttcatcgtcttactgttttttat |
929362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 412
Target Start/End: Original strand, 1201514 - 1201614
Alignment:
| Q |
316 |
atacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtt----tcttattcggactttctttaatgtttc |
411 |
Q |
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| T |
1201514 |
atacatttttcatatcatacaaaaacttcacgaggtcctgattgtgagttattgcattgtcttactgttttaatcttattcagattatctttaatgtttc |
1201613 |
T |
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| Q |
412 |
a |
412 |
Q |
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| T |
1201614 |
a |
1201614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 421
Target Start/End: Complemental strand, 929340 - 929304
Alignment:
| Q |
385 |
tcttattcggactttctttaatgtttcagaagaccgt |
421 |
Q |
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| T |
929340 |
tcttactcggactttctttaatgtttcagaagaccgt |
929304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 929676 - 929642
Alignment:
| Q |
234 |
ggatggaatcgaggactaaaccgttaaacggttat |
268 |
Q |
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| T |
929676 |
ggatggaatcgaggactaaaccgttaaactgttat |
929642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 24941 - 24981
Alignment:
| Q |
72 |
gtatcaaaggtgggaagaaaggtaggaaattctcacattta |
112 |
Q |
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| T |
24941 |
gtatcaaaggtggtaagaaagataggaaatgctcacattta |
24981 |
T |
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