View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_20 (Length: 418)
Name: NF1401_low_20
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 24564581 - 24564957
Alignment:
| Q |
13 |
aatatgacacctgaaagcccggcattcccacacactacaatctacgactctacgtaaagtttgaataccttgttaatgaattaaaatgttagtattagag |
112 |
Q |
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| T |
24564581 |
aatatgacacctgaaagcccggcattcccacacactacaatctacgactctacgtaaagtttgaataccttgttaatgaattaaaatgttagtattagaa |
24564680 |
T |
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| Q |
113 |
gaaggataaaaatgtttataaagtaagttagggtaaaatccaatttatatagacctttttggaccacttattcttcaagttttgaccaacttagaagtgc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24564681 |
gaaggataaaaatgtttataaagtaagttagggtaaaatccaatttatatagacctttttggaccacttagtcttcaagttttgaccaacttagaagtgc |
24564780 |
T |
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| Q |
213 |
atctctaaagagattaatccagttggagttgaatatgaaacagaaagcatacatgaggtagtcaatggacctcccaagtttttaactactaatggctgta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
24564781 |
atctctaaagagattaatccagttggagttgaatatgaaacagaaagcatacatga-gtagtcaatggacctcccatgtttttaactactaatggttgta |
24564879 |
T |
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| Q |
313 |
acactta-nnnnnnnnnatctggatggatcaaattcggtatttccgaggtttaaaacattcacacattatacatcaac |
389 |
Q |
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||||||| || |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |
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| T |
24564880 |
acacttattttttttttatttggatggatcaaattcggtatttctgaggtttacaacattcacacactatacatcaac |
24564957 |
T |
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