View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_24 (Length: 378)
Name: NF1401_low_24
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 31202654 - 31202381
Alignment:
| Q |
9 |
atcttatacttattagttgaatgaaaagcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttcccattactattgactattcatttc |
108 |
Q |
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| T |
31202654 |
atcttatacttattagttgaatgaaaagcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttcccattactattgacttttcatttc |
31202555 |
T |
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| Q |
109 |
attaagtcatagagtggtatattttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202554 |
attaagtcatagagtggtatattttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcatt |
31202455 |
T |
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| Q |
209 |
gatttcatttattccattcacttgtttcaaatatgaagcttatcatgaacacgtctttgcatcctttgtttctt |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31202454 |
gatttcatttattccattcacttgtttcaaatatgaagcttatcatgaacacgtctttgcatcttttgtttctt |
31202381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 32 - 282
Target Start/End: Complemental strand, 31222185 - 31221934
Alignment:
| Q |
32 |
aaaagcagaaaaaatgaaagtacacgggcccttacttaaatttt-gtctatttcccattactattgactattcatttcattaagtcatagagtggtatat |
130 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||| ||||| |||||| ||| |
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| T |
31222185 |
aaaagcaggaaaaatgaaagtaaacgggcccttacttaaatttttgtctatttcgcattactatcgacttttcatttcattaactcataaagtggtctat |
31222086 |
T |
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| Q |
131 |
tttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcattgatttcatttattccattcact |
230 |
Q |
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| T |
31222085 |
tttccatatatctctttccaggaacgcatctcttgctacaattaattgcttaatataacccttacacattcatggattgatttcatttattccattcact |
31221986 |
T |
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| Q |
231 |
tgtttcaaatatgaagcttatcatgaacacgtctttgcatcctttgtttctt |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31221985 |
tgtttcaaatatgaagcttatcatgaacacgtctttgcatcttttgtttctt |
31221934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 31183616 - 31183355
Alignment:
| Q |
22 |
tagttgaatgaaaa-gcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttcccattactattgactattcatttcattaagtcatag |
120 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
31183616 |
tagttgaatgaaaaagcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttcacattactattgacttttcatttcattaagtcatag |
31183517 |
T |
|
| Q |
121 |
agtggtatattttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcattgatttca-ttta |
219 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |||| || |||||||| ||| |
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| T |
31183516 |
agtggtctattttccatatatctctttccgggaacgtatctcatgctacaa-taattgcttaatataacccttacactttcaaccactgatttcattttc |
31183418 |
T |
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| Q |
220 |
ttccattcacttgtttcaaatatgaagcttatcatgaacacgtctttgcatcctttgtttctt |
282 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |
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| T |
31183417 |
tttcattcacttgtttcaaatatgaagcctatcatgaacaagtctttgcatcttttgtttctt |
31183355 |
T |
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