View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_28 (Length: 371)
Name: NF1401_low_28
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 32243980 - 32243724
Alignment:
| Q |
14 |
atatcagggttttgatcaaacaaatatatacgagtgatacttaattctatacctcctatnnnnnnngtt-gtaaagagtagtaactaatcatgtttctca |
112 |
Q |
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| T |
32243980 |
atatcagagttttgatcaaacaaatat----gagtgatacttaattctatacctcctataaaaaaagttagtaaagagtagtaactaatcatgtttctca |
32243885 |
T |
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| Q |
113 |
gtcttcgcgatggtacaaccactcttggactcaggcttcttccttgcatgtataacccaacagagaatgtaacccataaaggccccaagcaccagtacac |
212 |
Q |
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| T |
32243884 |
gtcttcgcgatagtacaaccactcttggactcaggcttcttccttgcatgtataacccaacagagaatgtaacccataaaggccccaagcaccagtacac |
32243785 |
T |
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| Q |
213 |
ttcctccttggacataccgagataatgtagcttcttcaatcaaacctttaggtttatcact |
273 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
32243784 |
ttcctccttggacataccgggataatgtagcttcttcaatcaaacctttaggtttagcact |
32243724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 230
Target Start/End: Complemental strand, 32249003 - 32248863
Alignment:
| Q |
94 |
taactaatcatgtttc-tcagtcttcgcgatggtacaaccactcttggactcaggct---tcttccttgcatgtataacccaacagagaatgtaacccat |
189 |
Q |
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|||||||||||||||| ||||||||| || | || |||||||| ||||||| |||| ||||||| |||||| ||| ||| |||||||| ||||| |
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| T |
32249003 |
taactaatcatgtttcctcagtcttcacggggctaaaaccactcctggactcgggctgcttcttcctagcatgtgaaacgaaaccaagaatgtagcccat |
32248904 |
T |
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| Q |
190 |
aaaggccccaagcaccagtacacttcctccttggacatacc |
230 |
Q |
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| T |
32248903 |
aaaggccccaagcactagtacacttcctccctggacatacc |
32248863 |
T |
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