View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_30 (Length: 349)
Name: NF1401_low_30
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 40411136 - 40411378
Alignment:
| Q |
14 |
aatataatatttagcttttaacataaaagcaatttttatggactatactactaatagtttaatttaatctcccaaaatgaagggcatgtttatttt---t |
110 |
Q |
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| T |
40411136 |
aatataatatttagcttttaacataaaagcaatttttatggactatactactaatagtttaatttaatctcccaaaatgaagggcatgtttatttttttt |
40411235 |
T |
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| Q |
111 |
tgagggagaagggcgtgtttattatacagaataaatatatcaaataaaattaaagaattcaacaaagggagaaaaacatgaagataattaattgagtacc |
210 |
Q |
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| T |
40411236 |
tgagggagaagggcatgtttattatacagaataaatatatcaaataaaattaaagaaatcaacaaagggagaaaaacatgaaaataattaattgagtacc |
40411335 |
T |
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| Q |
211 |
tgagaggccaatgaaagatcacctaataattgtttctttttat |
253 |
Q |
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| T |
40411336 |
tgagaggccaatgaaagatcacctaataattgtttctttttat |
40411378 |
T |
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