View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_40 (Length: 324)
Name: NF1401_low_40
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 93 - 264
Target Start/End: Original strand, 43561794 - 43561965
Alignment:
| Q |
93 |
accctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcgg |
192 |
Q |
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| T |
43561794 |
accctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcgg |
43561893 |
T |
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| Q |
193 |
atttctgatacccattttccccagcttcgcattcgaacgccgtgataaaccgggtggctgttgcagtctctg |
264 |
Q |
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| T |
43561894 |
atttccgatacccattttccccagcttcgcattcgaacgccgtgataaaccgggtggctgttgcagtctctg |
43561965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 36077744 - 36077810
Alignment:
| Q |
110 |
cagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattt |
176 |
Q |
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| T |
36077744 |
cagctacatcatgtgctatagctgccatttctggtgtagggtaagttcctagccatattcttgattt |
36077810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 4268763 - 4268648
Alignment:
| Q |
106 |
aaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgataccc |
205 |
Q |
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| T |
4268763 |
aaagctgctacatcgtgtgctctagctgccatttctggtgttgagaatgttcctagccagattcttgattttttgcgtggttcgcggatttcagataccc |
4268664 |
T |
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| Q |
206 |
attttccccagcttcg |
221 |
Q |
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| T |
4268663 |
attttccccagtttcg |
4268648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 179
Target Start/End: Original strand, 505529 - 505615
Alignment:
| Q |
93 |
accctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgatttttt |
179 |
Q |
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|||||||||| |||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| ||||||||| |
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| T |
505529 |
accctttatagctaaagcagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatattcttgatttttt |
505615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 16357817 - 16357926
Alignment:
| Q |
106 |
aaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgataccc |
205 |
Q |
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|||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| ||| || || | || || || ||||| ||||||| |
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| T |
16357817 |
aaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttcttggctcacgaatttcagataccc |
16357916 |
T |
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| Q |
206 |
attttcccca |
215 |
Q |
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|||||||||| |
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| T |
16357917 |
attttcccca |
16357926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 33589286 - 33589193
Alignment:
| Q |
133 |
gccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccattttccccagcttcgcattc |
226 |
Q |
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|||||||||| ||||| || ||||||||||||||||| ||| || || ||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
33589286 |
gccatttcagccgtagcatatgttccaagccagattcgacttttctttcgtggttcacggatttcggatacccattttccccatgttcgcattc |
33589193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 33602408 - 33602312
Alignment:
| Q |
130 |
gctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccattttccccagcttcgcattc |
226 |
Q |
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||||||||||||| || ||| | ||||| ||||||||||| ||| || || ||||| |||||||| || |||||||||||||| ||||||||| |
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| T |
33602408 |
gctgccatttcagcggttgcgaatgttcctagccagattcggtttttctttcgtggttctcggatttcagaaacccattttccccatgttcgcattc |
33602312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 71116 - 71010
Alignment:
| Q |
109 |
gcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtgattttttgcgaggttcgcggatttctgatacccatt |
208 |
Q |
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|||||| | |||||||||||||| |||||||||| ||| | | |||| || ||||| || || ||||| || || || ||||||||||| || ||||| | |
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| T |
71116 |
gcagcagcgtcatgcgctctagcagccatttcagcagtggggaaagtgcctagccaaatccgcgatttcttacgtggctcgcggatttcggacacccact |
71017 |
T |
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| Q |
209 |
ttcccca |
215 |
Q |
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||||||| |
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| T |
71016 |
ttcccca |
71010 |
T |
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