View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1401_low_42 (Length: 323)

Name: NF1401_low_42
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1401_low_42
NF1401_low_42
[»] chr6 (2 HSPs)
chr6 (80-323)||(31264104-31264347)
chr6 (199-323)||(22049691-22049815)
[»] chr7 (1 HSPs)
chr7 (88-323)||(22144698-22144934)
[»] chr3 (2 HSPs)
chr3 (88-323)||(12212515-12212751)
chr3 (88-323)||(13814841-13815076)
[»] chr2 (2 HSPs)
chr2 (199-323)||(44360076-44360200)
chr2 (205-323)||(15850991-15851109)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 80 - 323
Target Start/End: Original strand, 31264104 - 31264347
Alignment:
Q  80 tgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatattacggagatgctctattccatgtct 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31264104 tgagatgaagtcataacattgagatccataaatataaattattactcatcggataaattaccatctttccaatattacggagatgctctattccatgtct 31264203  T
Q  180 ttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactg 279  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31264204 ttcaactttccttgaattcagacttctgttgcgacaaatttgcatttgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactg 31264303  T
Q  280 cctcttgggacttctgatgaacgttgtttgggtcttctatggcc 323  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  31264304 cctcttgggacttctgatgaacgttgttttggtcttctatggcc 31264347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 22049815 - 22049691
Alignment:
Q  199 agacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatg 298  Q
    |||| ||||||||||| ||||||||||||| |||||||||  |||||||| |||| ||| |||| |||||| |||| ||||||||||| || ||||||||    
T  22049815 agacatctgttgagacgaatttgcatctgattgttcttgttgcgtatgatgttaatgaccagttcgagcgattcattactgcctcttgtgatttctgatg 22049716  T
Q  299 aacgttgtttgggtcttctatggcc 323  Q
    |||||||||| ||| |||| |||||    
T  22049715 aacgttgttttggttttctttggcc 22049691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 88 - 323
Target Start/End: Original strand, 22144698 - 22144934
Alignment:
Q  88 agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact 186  Q
    ||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||||| ||  |||||||    
T  22144698 agtcataacattgcgaaccataaatataaattattactcatcggataaatcaccatctgtccagtattgacggagatgctctattccacgtaattcaact 22144797  T
Q  187 ttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttg 286  Q
    | | ||||||| |||| | ||||||||| ||||||||||||| |||||| ||  |||||||| |||| | | |||| |||||||||||||||| ||||||    
T  22144798 tcccttgaatttagacatttgttgagacgaatttgcatctgattgttctcgttgcgtatgatgttaatggccagttcgagcgactcatcactgtctcttg 22144897  T
Q  287 ggacttctgatgaacgttgtttgggtcttctatggcc 323  Q
     || |||||||||||||||||| |||||||| |||||    
T  22144898 tgatttctgatgaacgttgttttggtcttctttggcc 22144934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 88 - 323
Target Start/End: Original strand, 12212515 - 12212751
Alignment:
Q  88 agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact 186  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||| || | |||| ||||||||||||||||||| ||  |||||||    
T  12212515 agtcataacattgagaaccataaatataaattattactcatcggataaatcatcatctgtctagtattgacggagatgctctattccacgtaattcaact 12212614  T
Q  187 ttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttg 286  Q
    | | ||||||| |||| ||||||||||| ||||||||||||| |||||| ||  ||||||||||||| | | |||| ||||||||||| || | ||||||    
T  12212615 tcccttgaatttagacatctgttgagacgaatttgcatctgattgttctcgttgcgtatgatattaatggccagttcgagcgactcattaccgtctcttg 12212714  T
Q  287 ggacttctgatgaacgttgtttgggtcttctatggcc 323  Q
     || ||||||||||| |||||| ||||| || |||||    
T  12212715 tgatttctgatgaacattgttttggtctactttggcc 12212751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 88 - 323
Target Start/End: Complemental strand, 13815076 - 13814841
Alignment:
Q  88 agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact 186  Q
    |||||||||| ||||| |||||| |||||||||||||| ||| ||||||| ||||||| |||| |||| ||||||||||||||||||| ||  |||||||    
T  13815076 agtcataacactgagaaccataagtataaattattactcatcagataaatcaccatctatccagtattgacggagatgctctattccacgtaattcaact 13814977  T
Q  187 ttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttg 286  Q
    | | ||||||| |||| ||||||||||| ||||||||||||| |||||| ||  |||||||| |||  | | |||| ||||||||||| |||| ||||||    
T  13814976 tcccttgaatttagacatctgttgagacgaatttgcatctgattgttctcgttgcgtatgatgttagtggccagttcgagcgactcattactgtctcttg 13814877  T
Q  287 ggacttctgatgaacgttgtttgggtcttctatggcc 323  Q
     || || | ||||||||||||| |||||||| |||||    
T  13814876 tga-tttttatgaacgttgttttggtcttctttggcc 13814841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 44360200 - 44360076
Alignment:
Q  199 agacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatg 298  Q
    |||| ||||||||||| ||||||||||||| |||||||||  |||||||| |||| ||| |||| |||||| |||| ||||||||||| || ||||||||    
T  44360200 agacatctgttgagacgaatttgcatctgattgttcttgttgcgtatgatgttaatgaccagttcgagcgattcattactgcctcttgtgatttctgatg 44360101  T
Q  299 aacgttgtttgggtcttctatggcc 323  Q
    |||||||||| ||| |||| |||||    
T  44360100 aacgttgttttggttttctttggcc 44360076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 323
Target Start/End: Complemental strand, 15851109 - 15850991
Alignment:
Q  205 ctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatgaacgtt 304  Q
    |||||||||||||||||||||||| |||||||||   ||||||| |||| |   |||| ||||||||||| |||| || |||| |||||| |||||||||    
T  15851109 ctgttgagacaaatttgcatctgattgttcttgttgtgtatgatgttaatggtgagttcgagcgactcattactgtcttttggaacttcttatgaacgtt 15851010  T
Q  305 gtttgggtcttctatggcc 323  Q
    |||| |||||||| |||||    
T  15851009 gttttggtcttctttggcc 15850991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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