View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_45 (Length: 319)
Name: NF1401_low_45
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_45 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 83 - 257
Target Start/End: Complemental strand, 333690 - 333516
Alignment:
| Q |
83 |
aacctgtgcaaggattcgaatttttgcaagtttttcaacaaagtcgatgccaacttccctttgtaaaacatctttgagaagatttccaagcaacttacag |
182 |
Q |
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| T |
333690 |
aacctgtgcaaggattcgaatttttgcaagtttttcaacaaagtcgatgccaacttccctttgtaaaacatctttgagaagatttccaagcaacttacag |
333591 |
T |
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| Q |
183 |
tcatcgtcgaagccttggaaggacatttcctcggcaatgtcatcagtagtgtccgtcatgtttactcgaacacag |
257 |
Q |
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| T |
333590 |
tcatcgtcgaagccttggaaggacatttcctcggcaatgtcatcagtagtgtccgtcatgtttactcgaacacag |
333516 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 42169015 - 42168930
Alignment:
| Q |
156 |
ttgagaagatttccaagcaacttacagtcatcgtcgaagccttggaaggacatttcctcggcaatgtcatcagtagtgtccgtcat |
241 |
Q |
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| T |
42169015 |
ttgagaagattaccaagcaacctacaatcatcatcaaagctctggaacgagatttcttcagcaatatcatctgtagtgtctgtcat |
42168930 |
T |
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