View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_47 (Length: 318)
Name: NF1401_low_47
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7622615 - 7622835
Alignment:
| Q |
1 |
aactcaaaattcttccctttaaaatccactgaacgtataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622615 |
aactcaaaattcttccctttaaaatccactgaacttataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatgg |
7622714 |
T |
|
| Q |
101 |
cccatgcattaacatagactagagtttttggtttaatctcataaccatctatgttacaactttctattgtttctcttggtaatagtaatggtgatggagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7622715 |
cccatgcattaacatagactagagtttttggtttaatctcataaccatctatgttacaactttctattgtttctcttggcaatagtaatggtgatggagg |
7622814 |
T |
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| Q |
201 |
gaataatcttaatgtctcttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7622815 |
gaataatcttaatgtctcttt |
7622835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7627166 - 7627386
Alignment:
| Q |
1 |
aactcaaaattcttccctttaaaatccactgaacgtataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627166 |
aactcaaaattcttccctttaaaatccactgaacttataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatgg |
7627265 |
T |
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| Q |
101 |
cccatgcattaacatagactagagtttttggtttaatctcataaccatctatgttacaactttctattgtttctcttggtaatagtaatggtgatggagg |
200 |
Q |
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| T |
7627266 |
cccatgcattaacatagactagagtttttggtttaatctcataaccatctatgttacaactttctattgtttctcttggcaatagtaatggtgatggagg |
7627365 |
T |
|
| Q |
201 |
gaataatcttaatgtctcttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7627366 |
gaataatcttaatgtctcttt |
7627386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 7634304 - 7634522
Alignment:
| Q |
3 |
ctcaaaattcttccctttaaaatccactgaacgtataatgaacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcc |
102 |
Q |
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|
||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
7634304 |
ctcaaaatttttccctttaaagtccactgaactcataatgaacctttcaggataaaactcttcagggtctttccaattctcaggatcccttcctatggcc |
7634403 |
T |
|
| Q |
103 |
catgcattaacatagactagagtttttggtttaatctcataaccatctatgttacaactttctattgtttctcttggtaatagtaatggtgatggaggga |
202 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || | |
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| T |
7634404 |
catgcattaacatacactaaagtttttggtttaatctcataaccatctatgttacaattttctattgtttctcttggtactagtaatggtgatggtggaa |
7634503 |
T |
|
| Q |
203 |
ataatcttaatgtctcttt |
221 |
Q |
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||||||| | ||||||||| |
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| T |
7634504 |
ataatctcattgtctcttt |
7634522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 23610280 - 23610347
Alignment:
| Q |
43 |
aacctttcaggataaaactcttcagggtcattccaattctcaggatcccttgctatggcccatgcatt |
110 |
Q |
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||||||||||||||||||| || ||||||||||||| | |||||||||| |||| ||||| ||||| |
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| T |
23610280 |
aacctttcaggataaaacttatctgggtcattccaatatttaggatcccttcctattgcccaagcatt |
23610347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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