View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_48 (Length: 318)
Name: NF1401_low_48
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 80 - 274
Target Start/End: Original strand, 32158003 - 32158198
Alignment:
| Q |
80 |
agacctaactcatctacttatgaagaagnnnnnnngtgcgagagtttttggtaatg-ataattagttgtactatacctcaacaatgggagtaaaccatct |
178 |
Q |
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| T |
32158003 |
agacctaactcatctacttatgaagaagaaaaaaagtgtgagagtttgtggtactggataattagttgtactatacctcaacaatgggagtaaaccatct |
32158102 |
T |
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| Q |
179 |
aagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaatacttgcaaccattcatc |
274 |
Q |
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| T |
32158103 |
aagacgaaaacggggattagtagttcccttgacaggaatcaaatagcaggtaacattgatgttgaactcagctgctaatacttgcaaccattcatc |
32158198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 274
Target Start/End: Original strand, 32168978 - 32169100
Alignment:
| Q |
152 |
tacctcaacaatgggagtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagct |
251 |
Q |
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| T |
32168978 |
tacctcagcaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttcagagatgttgaattcagca |
32169077 |
T |
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| Q |
252 |
gctaatacttgcaaccattcatc |
274 |
Q |
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| T |
32169078 |
gctactaattgcaaccattcatc |
32169100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 32165187 - 32165240
Alignment:
| Q |
152 |
tacctcaacaatgggagtaaaccatctaagacgaaaacggggattagtggttcc |
205 |
Q |
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| T |
32165187 |
tacctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttcc |
32165240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 44288314 - 44288280
Alignment:
| Q |
240 |
ttgaactcagctgctaatacttgcaaccattcatc |
274 |
Q |
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| T |
44288314 |
ttgaactcagctgctaatgcttgcaaccattcatc |
44288280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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