View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1401_low_52 (Length: 311)
Name: NF1401_low_52
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_52 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 30735600 - 30735658
Alignment:
| Q |
99 |
attattcaatagcatcattgtagtctttattgaaatctaatacaaaatacatttatgca |
157 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30735600 |
attattcaataatatcattgtagtatttattgaaatctaatacaaaatacatttatgca |
30735658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 13492079 - 13492121
Alignment:
| Q |
186 |
ttggtaaagtatcaggttgtatttctaattcttcctcttcatc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13492079 |
ttggtaaagtatcaggttgtatttctaattcttcctcttcatc |
13492121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 54310802 - 54310749
Alignment:
| Q |
100 |
ttattcaatagcatcattgtagtctttattgaaatctaatacaaaatacattta |
153 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
54310802 |
ttattcaatcgtatcattgtagtctttattgaaatgttatacataatacattta |
54310749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 52364125 - 52364165
Alignment:
| Q |
113 |
tcattgtagtctttattgaaatctaatacaaaatacattta |
153 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
52364125 |
tcattgtagtctttattgaaatgttatacataatacattta |
52364165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University