View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_55 (Length: 309)
Name: NF1401_low_55
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 20823315 - 20823415
Alignment:
| Q |
115 |
cagaagtaaaacaaaatcttacaccatccgtctatagttataagactatttnnnnnnnnta-ttgtctctaaatataagactatctaaaaatttgtagat |
213 |
Q |
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| T |
20823315 |
cagaagtaaaacaaaatcttactccatccgtctctaattataagattatttaaaaaaaaaaattgtctctaaatataagactatctaaaaatttgtagat |
20823414 |
T |
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| Q |
214 |
g |
214 |
Q |
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| T |
20823415 |
g |
20823415 |
T |
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