View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_59 (Length: 289)
Name: NF1401_low_59
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 36168768 - 36168592
Alignment:
| Q |
47 |
gattatacttaatggattaaagtttgattgttattgttgttgatgatatgtgtatcaaactcaatgcggctcaaacacactttaatatacaggtcaagtg |
146 |
Q |
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| T |
36168768 |
gattttacttaatggattaaagtttgattgttattgttgttgatgatatgtgtatcaagctcaatgcggctcaaacacactttaatatacaggtcaagtg |
36168669 |
T |
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| Q |
147 |
acttgtgtcattttgatccaatctactataagttgttttgatcctgatttactctgccttttagctcacatggatac |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36168668 |
acttgtgtcattttgatccaatctactataagttgttttgatcctgatttactctgccttttagctcacatggatac |
36168592 |
T |
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