View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_6 (Length: 581)
Name: NF1401_low_6
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 29 - 409
Target Start/End: Original strand, 43316748 - 43317134
Alignment:
| Q |
29 |
aagagctgcatcaagtgtttctggacatggcagttttggtccaatcccaaggtgaagagttgaatgacattgagagccaaatgatgcgagcaaattcgta |
128 |
Q |
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| T |
43316748 |
aagagctgcatcaagtgtttctggacatggcagttttggtccaatcccaaggtgaagagttgaatgacattgagagccaaatgatgcgagcaaattcgta |
43316847 |
T |
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| Q |
129 |
tgttagaggaggagtacaacaattacatgttgctaggaaaaatcaaaagaatacccgtaaatggacatgttttgccattttactactcctgatcctaatt |
228 |
Q |
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| T |
43316848 |
tgttagaggaggagtacaacaattacatgttgctaggaaaaatcaaaagaatacccgtgaatggacatgttttgccattttactac------tcctaatt |
43316941 |
T |
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| Q |
229 |
attgctttggttatgatcctccctattgttttaaaaaataattagttgagattaattatttaattctcaaacggtggctactggctactgtgaaggttga |
328 |
Q |
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| T |
43316942 |
attgctttggttataatcctccctattgttttaaaaaataattagttgagattaattaattaattctcaaatggtggctactggctactgtgaaggttga |
43317041 |
T |
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| Q |
329 |
ttgattatg------------aatcaaaacttggtagtcaagtcaagcatcacttgtactagcatgagaaaatgcatctttatacagtagtac |
409 |
Q |
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| T |
43317042 |
ttgattatgaataaaaatattaatcaaaacttggtagtcaagtcaagcatcacttgtactagcatgagaaaatgcatctttatacagtagtac |
43317134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 474 - 533
Target Start/End: Original strand, 43317194 - 43317253
Alignment:
| Q |
474 |
aagacttatccacaaaagaaaatttgttcaaatattttagattcttcgtttctagaatta |
533 |
Q |
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| T |
43317194 |
aagacttatcaacaaaagaaaatttgttcaaagattttagattcttcgtttctagaatta |
43317253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 24710235 - 24710060
Alignment:
| Q |
31 |
gagctgcatcaagtgtttctggacatggcagttttggtccaatcccaaggtgaagagttgaatgacattgagagccaaatgatgcgagcaaattcgtatg |
130 |
Q |
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| T |
24710235 |
gagcttcaccaagtgtttatggacatgtctgttttggttcaatcacaaggtgaacaattggataatattgaaagccacgtggcacgtgctaattcgtatg |
24710136 |
T |
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| Q |
131 |
ttagaggaggagtacaacaattacatgttgctaggaaaaatcaaaagaatacccgtaaatggacatgttttgccat |
206 |
Q |
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| T |
24710135 |
ttagaggtggggtccaacaattgcatgttgctaggaagcaccaaatgaataccagaaaatggacttgtattgccat |
24710060 |
T |
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