View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_61 (Length: 268)
Name: NF1401_low_61
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 32988445 - 32988679
Alignment:
| Q |
29 |
agttacaaggtttggagtatgtgcacttgccatgagattccaaatgaggttctgaggttgggtgttgagggactcatcccaagctcgtacagcaatatcc |
128 |
Q |
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| T |
32988445 |
agttacaaggtttggagtatgtgtacttgccatgagattccaaatgaggttctgaggttgggtgttgagggactcatcccaagctcgtacagcaatatcc |
32988544 |
T |
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| Q |
129 |
ttggctcctagaaggtccaacacttcaacttccaaggaccaaaagcaccagcaccagtacttaccgtacttgtttggtttttctgaatggtccaatgtgc |
228 |
Q |
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| T |
32988545 |
ttggctcctagaaggtccaacacttcaacttccaaggaccaaaagcaccagcaccagtacttaccgtacttgtttggtttttctgaatggtccaatgtgc |
32988644 |
T |
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| Q |
229 |
atacttgccatgtttcaccaccgtcctttgctact |
263 |
Q |
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| T |
32988645 |
atacttgccatgtttcaccaccgtccattgttact |
32988679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 32960034 - 32960184
Alignment:
| Q |
104 |
atcccaagctcgtacagcaatatccttggctcctagaaggtccaacacttcaacttccaaggaccaaaagcaccagcaccagtacttaccgtacttgttt |
203 |
Q |
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| T |
32960034 |
atcccatgcacgtactgcaatctctttggctccaaaaaagtctaacacttcaacctctaaagaccaaaagcaccaacaccaatattttccatatttgctt |
32960133 |
T |
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| Q |
204 |
ggtttttctgaatggtccaatgtgcatacttgccatgtttcaccaccgtcc |
254 |
Q |
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| T |
32960134 |
ggtttctcttgatgctccaatttgcatacttgccatgtttcaccaccgtcc |
32960184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 65 - 254
Target Start/End: Original strand, 24863496 - 24863685
Alignment:
| Q |
65 |
attccaaatgaggttctgaggttgggtgttgagggactcatcccaagctcgtacagcaatatccttggctcctagaaggtccaacacttcaacttccaag |
164 |
Q |
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| T |
24863496 |
attccaaatgagattttcaggttgggtgttgagtgcctcatcccatgctcttacagcaatctccttggttccaagaaggtccagcacctcaacttccaga |
24863595 |
T |
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| Q |
165 |
gaccaaaagcaccagcaccagtacttaccgtacttgtttggtttttctgaatggtccaatgtgcatacttgccatgtttcaccaccgtcc |
254 |
Q |
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| T |
24863596 |
gaccaaaagcaccaacaccaatattttccatattttgttggtttttctggatggtccaatgtgcacacgtgccatgtttctccaccgtcc |
24863685 |
T |
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