View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1401_low_62 (Length: 261)
Name: NF1401_low_62
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_62 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 6674884 - 6674656
Alignment:
| Q |
11 |
attcttttgtttcttcctgttatagaatgcatgtacataacttgttaaaggcatcaattgaattttgtagcgcgttgccatagaaagatatgcacaagag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6674884 |
attcttttgtttcttcctgttatagaatgcatgtacataatttgttaaaggcatcaattgaattttgtagcgcgttgccatagaaagatatgcacaagag |
6674785 |
T |
|
| Q |
111 |
agacctacatataacttgaacccgatgtgagaaaacaaggtaaaataagtaaacaaggcggtaaaacaaactatcacggtaaaagtgaataggcacttga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6674784 |
agacctacatataacttgaacccgatgtgagaaaacaaggtaaaataagtaaacaaggcggtaaaacaaactatcacggtaaaagtgaataggcacttga |
6674685 |
T |
|
| Q |
211 |
atgtcgagatttcctcttcattttgttgg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6674684 |
atgtcgagatttcctcttcattttgttgg |
6674656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University