View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1401_low_70 (Length: 246)

Name: NF1401_low_70
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1401_low_70
NF1401_low_70
[»] chr8 (4 HSPs)
chr8 (20-246)||(15851556-15851782)
chr8 (20-239)||(15858456-15858675)
chr8 (20-239)||(15844321-15844540)
chr8 (20-239)||(15865524-15865743)
[»] chr4 (1 HSPs)
chr4 (76-176)||(11019477-11019577)
[»] chr2 (8 HSPs)
chr2 (25-128)||(30484791-30484894)
chr2 (70-196)||(30404535-30404661)
chr2 (70-218)||(8378960-8379108)
chr2 (90-218)||(30384998-30385126)
chr2 (64-240)||(23783310-23783486)
chr2 (70-218)||(30395750-30395898)
chr2 (63-121)||(30431413-30431471)
chr2 (63-128)||(30425373-30425438)
[»] chr5 (1 HSPs)
chr5 (64-217)||(41626803-41626956)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 15851556 - 15851782
Alignment:
Q  20 aattaggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggacc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15851556 aattaggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggacc 15851655  T
Q  120 ccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcagaaaaccgttcaggattgaacttctttgcatcatcaccccataga 219  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15851656 ccatccaaaagggatatacgaaacttggccttttgtggcctttgcaattccttcagaaaaccgttcaggattgaacttctttgcatcatcaccccataga 15851755  T
Q  220 tcttgatcttggtgaatcaaatgtact 246  Q
    |||||||||||||||||||||||||||    
T  15851756 tcttgatcttggtgaatcaaatgtact 15851782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 15858456 - 15858675
Alignment:
Q  20 aattaggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggacc 119  Q
    |||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15858456 aatttggagaaagttcgaatgagaaattctgcagcaacaatgatactgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggacc 15858555  T
Q  120 ccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcagaaaaccgttcaggattgaacttctttgcatcatcaccccataga 219  Q
    |||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||    
T  15858556 ccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggtttgaactcctttgcatcatcaccccataga 15858655  T
Q  220 tcttgatcttggtgaatcaa 239  Q
    || |||||||||||||||||    
T  15858656 tcatgatcttggtgaatcaa 15858675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 15844321 - 15844540
Alignment:
Q  20 aattaggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggacc 119  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15844321 aattaggagaaagttcaaatgagaaattctgcagcaacaatgatattgctatctttgcttctaataaggtaaagttttgtccaagacaaattctaggacc 15844420  T
Q  120 ccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcagaaaaccgttcaggattgaacttctttgcatcatcaccccataga 219  Q
    ||||||||| |||| ||| |||||||| |||||||||||||| ||||||||||||| ||||| ||| || ||||||| |||||||||||| |||||||||    
T  15844421 ccatccaaaggggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcgggtttgaactcctttgcatcatccccccataga 15844520  T
Q  220 tcttgatcttggtgaatcaa 239  Q
    |||||||| |||||||||||    
T  15844521 tcttgatcatggtgaatcaa 15844540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 15865524 - 15865743
Alignment:
Q  20 aattaggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggacc 119  Q
    |||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15865524 aatttggagaaagttcgaatgagaaattctgcagcagcaatgaaattgctatctttgcttctagtaaggcaaagttttgtccaagacaaattctaggacc 15865623  T
Q  120 ccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcagaaaaccgttcaggattgaacttctttgcatcatcaccccataga 219  Q
    |||||||||||||| ||| |||||||  |||||||| ||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||    
T  15865624 ccatccaaaagggaaataagaaacttttccttttgtagcctttgcaattccttcagcaaacctttcaggtttgaactcctttgcatcatcaccccataga 15865723  T
Q  220 tcttgatcttggtgaatcaa 239  Q
    || |||||||||||||||||    
T  15865724 tcatgatcttggtgaatcaa 15865743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 11019577 - 11019477
Alignment:
Q  76 gcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcag 175  Q
    |||||||||||  ||||||||||||||| ||||| ||| ||||||||||||||||| |  || ||||||| ||| ||||||||||||| || ||||||||    
T  11019577 gcttctaataaaccaaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactccttcag 11019478  T
Q  176 a 176  Q
    |    
T  11019477 a 11019477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 30484894 - 30484791
Alignment:
Q  25 ggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatc 124  Q
    ||||||||||| |||||||||| |||||  | || || |||||| ||||||||||| || | || |||||||||||||| ||||||||||||||||| ||    
T  30484894 ggagaaagttcaaatgagaaatgctgcaaaatcaatgttattgccatctttgcttccaacatggaaaagttttgtccaatacaaattctaggaccccctc 30484795  T
Q  125 caaa 128  Q
    ||||    
T  30484794 caaa 30484791  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 30404661 - 30404535
Alignment:
Q  70 atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattc 169  Q
    ||||||||||||||||| ||||||||||| || |  |||| |||||||||  | ||||| |||| | |  ||||||||||||||||||| ||||| ||||    
T  30404661 atctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaacaaacttggccttttgttgcttttgcgattc 30404562  T
Q  170 cttcagaaaaccgttcaggattgaact 196  Q
    |||| ||||| |  || ||||||||||    
T  30404561 cttccgaaaatctctctggattgaact 30404535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 8378960 - 8379108
Alignment:
Q  70 atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattc 169  Q
    ||||||||||| |||| || |||||||||||| |  |||| ||||||||||| |||||| || | |||   || |   || |||||||| || | |||||    
T  8378960 atctttgcttccaatagggaaaagttttgtcccatgcaaactctaggaccccctccaaatggaaaatatataaatctaccatttgttgctttggaaattc 8379059  T
Q  170 cttcagaaaaccgttcaggattgaacttctttgcatcatcaccccatag 218  Q
    |||||| ||| |  |||||||||||| ||||||||||||||||||||||    
T  8379060 cttcagcaaatctctcaggattgaacatctttgcatcatcaccccatag 8379108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 218
Target Start/End: Complemental strand, 30385126 - 30384998
Alignment:
Q  90 aaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcagaaaaccgttcagga 189  Q
    ||||||||||||||  ||||||| ||||||||||||||| || | | | ||||||   || |||||||| || | ||||||| || |||| | |||||||    
T  30385126 aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccaaaaaatctttcagga 30385027  T
Q  190 ttgaacttctttgcatcatcaccccatag 218  Q
    |||||| | || |||||||||||||||||    
T  30385026 ttgaacattttagcatcatcaccccatag 30384998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 23783310 - 23783486
Alignment:
Q  64 attgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttg 163  Q
    ||||| ||||||||||| || | || ||||||||||||||  || ||||||||||||  |||||| || | ||| |||| |   || |||||||| || |    
T  23783310 attgccatctttgcttccaacagggaaaagttttgtccaatgcagattctaggacccgctccaaacggaaaatatgaaaatctaccgtttgttgctttgg 23783409  T
Q  164 caattccttcagaaaaccgttcaggattgaacttctttgcatcatcaccccatagatcttgatcttggtgaatcaaa 240  Q
     ||||||  ||||||| |  |||||||||||  |||| ||||||||||||||||| ||   ||| ||||||||||||    
T  23783410 aaattccaccagaaaatctctcaggattgaaaatcttagcatcatcaccccatagttcacaatcatggtgaatcaaa 23783486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 30395898 - 30395750
Alignment:
Q  70 atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattc 169  Q
    ||||||||||| | || || ||||||||||||||  |||||||| |||||||||||||| || | | | ||||||   || |||||||| || | |||||    
T  30395898 atctttgcttccattagggaaaagttttgtccaatgcaaattcttggaccccatccaaatggaaaaaatgaaactctaccatttgttgctttagaaattc 30395799  T
Q  170 cttcagaaaaccgttcaggattgaacttctttgcatcatcaccccatag 218  Q
    || | ||||| |  |||||||||||| | || |||||||| ||||||||    
T  30395798 ctccggaaaatctctcaggattgaacattttagcatcatcgccccatag 30395750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 30431471 - 30431413
Alignment:
Q  63 tattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggacccc 121  Q
    |||||| ||||||||||| || | || ||||||||||||||  ||||||||||||||||    
T  30431471 tattgccatctttgcttccaacatggaaaagttttgtccaattcaaattctaggacccc 30431413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 30425438 - 30425373
Alignment:
Q  63 tattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaa 128  Q
    |||||| ||||||||||| || |  | ||||||||||||||  |||||||||||||||| ||||||    
T  30425438 tattgccatctttgcttccaacatagaaaagttttgtccaatgcaaattctaggaccccctccaaa 30425373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 41626803 - 41626956
Alignment:
Q  64 attgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttg 163  Q
    ||||| ||||||||||| ||||  | ||||||||| ||||  || || ||||||||||||||||| || | | | ||||||   || || ||||| || |    
T  41626803 attgccatctttgcttccaatagagaaaagttttgcccaatgcagatcctaggaccccatccaaatggaaaaaatgaaactctaccgttcgttgctttgg 41626902  T
Q  164 caattccttcagaaaaccgttcaggattgaacttctttgcatcatcaccccata 217  Q
     ||||||| ||||||| | ||||||||||||| | || ||||||||||||||||    
T  41626903 aaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccata 41626956  T

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