View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_75 (Length: 234)
Name: NF1401_low_75
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 5424569 - 5424702
Alignment:
| Q |
85 |
gaacgagcgttatgtttaaaataaccacaaaaaggaacaatagataaatttgtttgtaaataagtataaaagtcttcacataaggatggattgaccgttg |
184 |
Q |
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| T |
5424569 |
gaacgagcgttatatttaaaataaccacaaaaaggagcaataaataaatttgtttgtaaatgagtataaaagtcttcacataaggatggattgaccgttg |
5424668 |
T |
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| Q |
185 |
aagaagataatcttgaacaatttaatgaacattt |
218 |
Q |
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| T |
5424669 |
aagaagatgatcttgaacaatctaatgaacattt |
5424702 |
T |
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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 702843 - 702931
Alignment:
| Q |
125 |
tagataaatttgtttgtaaataagtataaaagtcttcacataaggatggattgaccgttgaagaagataatcttgaacaatttaatgaa |
213 |
Q |
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| T |
702843 |
tagataaatttgtttgtaaacgagtaaaagagtcttcgaataatgatggattgaccatagaagaaaataatcttgaacaatctaatgaa |
702931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 15086140 - 15086035
Alignment:
| Q |
113 |
aaaaaggaacaatagataaatttgtttgtaaataagtataaaagtcttcacataaggatggattgaccgttgaagaagataatcttgaacaatttaatga |
212 |
Q |
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| T |
15086140 |
aaaagggagcaatagataaatttgtttgtaaatgagtagaagaaccttcgagtaatgatggattagccgtagatgaagataatcttgaacaatctaatga |
15086041 |
T |
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| Q |
213 |
acattt |
218 |
Q |
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| T |
15086040 |
aaattt |
15086035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 25810565 - 25810661
Alignment:
| Q |
122 |
caatagataaatttgtttgtaaataagtataaaagtcttcacataaggatggattgaccgttgaagaagataatcttgaacaatttaatgaacattt |
218 |
Q |
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| T |
25810565 |
caatagataaatttgtttgtaacctagtagtagagtttttgaataatgttggattgaccgtagaagaagatgattttgaacaatttaatgaaaattt |
25810661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 26590232 - 26590292
Alignment:
| Q |
153 |
aaagtcttcacataaggatggattgaccgttgaagaagataatcttgaacaatttaatgaa |
213 |
Q |
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| T |
26590232 |
aaagtcttcagataacgattgattggtcgtaaaagaagataatcttgaacaatctaatgaa |
26590292 |
T |
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