View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_76 (Length: 226)
Name: NF1401_low_76
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 34314914 - 34314862
Alignment:
| Q |
46 |
taccattcaattcaagaagtatcaaacataaaagataaaggtacaaaacacaa |
98 |
Q |
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| T |
34314914 |
taccattcaattcaagaagtatcaaacataaaagataaagctacaaaacacaa |
34314862 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 34316824 - 34316903
Alignment:
| Q |
47 |
accattcaattcaagaagtatcaaacataaaagataaaggtaca-aaacacaaaacccaactagctatagagaattctaa |
125 |
Q |
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| T |
34316824 |
accattcaattcaaggagcatcaaacatacaaaataaagctacagagacataaaacctaactagctatagagatttctaa |
34316903 |
T |
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