View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_8 (Length: 541)
Name: NF1401_low_8
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 86 - 377
Target Start/End: Complemental strand, 14301899 - 14301607
Alignment:
| Q |
86 |
ctgttttaatcttcttgtgaatcactctccctgtcttgaacaattaccaaacaggtgttgaagaattgattaaggtctaagaatcaaaaatttatcattg |
185 |
Q |
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| T |
14301899 |
ctgttttaatcttcttgtgaatcgctctcactgtcttgaagaattaccaaacaggtgttgaagaatcgattaaggtctatgaatcaaaaatttatcattg |
14301800 |
T |
|
| Q |
186 |
gattttgtctcaaggacaagattgtgtgtgagaatgtgtagatgttcttacttttatttttaat-aatccaaaacatcgattaaaaccgatagttaattt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14301799 |
gattttgtctcaaggacaagattgtgtgtgagaatgtgtagatgttcttacttttattcttaatgaatccaaaacatcgattaaaaccgatagttaattt |
14301700 |
T |
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| Q |
285 |
tccccgcataatatttact-nnnnnnngtgctctttaactaatttgagcttttagagagaattcattttattcttctccatcgttcattttcag |
377 |
Q |
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| T |
14301699 |
tccctgcataatatttactaaaaaaaagtactctttaactaa-ttcacgttttcgagagaattctttttattcttctccatggttctttttcag |
14301607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 14319685 - 14319546
Alignment:
| Q |
91 |
ttaatcttcttgtgaatcactctccctgtcttgaacaattaccaaacaggtgttgaagaattgattaaggtctaagaatcaaaaatttatcattggattt |
190 |
Q |
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| T |
14319685 |
ttaatcttcttgtgaatcgctctcactgtcttgaagaatcaccaaacacgtgttgaagaatcaattaaggtctatgaataaaaaatttattattggattt |
14319586 |
T |
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| Q |
191 |
tgtctcaaggacaagattgtgtgtgagaatgtgtagatgt |
230 |
Q |
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| T |
14319585 |
tgtctcaaggacaagattgtgtgtgagaatgtgtaaatgt |
14319546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 368 - 447
Target Start/End: Complemental strand, 14301578 - 14301496
Alignment:
| Q |
368 |
tcattttcaggttc---ttgtctctatctgcacacgctcgacattattattgctttgttctaggtacttccattctagttatt |
447 |
Q |
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| T |
14301578 |
tcattttcaggttcctcttgtctctatctacacacgcacgacattattattgctttgttataggtatttccattctagttatt |
14301496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 16731770 - 16731640
Alignment:
| Q |
81 |
tgaatctgttttaatcttcttgtgaatcactctccctgtcttgaacaattaccaaacaggtgttgaagaattgattaaggtctaagaatcaaaaatttat |
180 |
Q |
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| T |
16731770 |
tgaatctgatttaatcttctcgtgaattgctctctctatcatgaaaaattatcgaacaagtaatgaagaattgattagggtctgtgaatcaaaaacatct |
16731671 |
T |
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| Q |
181 |
cattggattttgtctcaaggacaagattgtg |
211 |
Q |
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| T |
16731670 |
cagaggattttgtctcaaggactaaattgtg |
16731640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 14302348 - 14302302
Alignment:
| Q |
19 |
aaaagactccaacattgctcctatccatagtgatgatacattgagaa |
65 |
Q |
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| T |
14302348 |
aaaagactccaacattgctcctgtccatagtgatgctacattaagaa |
14302302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 16731632 - 16731559
Alignment:
| Q |
197 |
aaggacaagattgtgtgtgagaatgtgtagatgttcttacttttatttttaat-aatccaaaacatcgattaaa |
269 |
Q |
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| T |
16731632 |
aaggactagattgtgcgtgagaatgtgtaggtgatcttacttttattttgaatgaatctgaaacattgattaaa |
16731559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 16468606 - 16468755
Alignment:
| Q |
82 |
gaatctgttttaatcttcttgtgaatcactctccctgtcttgaacaattaccaaacaggtgttgaagaattgattaaggtctaagaatcaaaaatttatc |
181 |
Q |
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||||||| |||||||| ||||||||| | || |||||||||| || ||| ||| |||||||||||||||||||||| | |||||||||| || || |
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| T |
16468606 |
gaatctgaattaatcttattgtgaatcgatatctctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtccatgaatcaaaaacttctc |
16468705 |
T |
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| Q |
182 |
attggattttgtctcaaggacaagattgtgtgtgagaatgtgtagatgtt |
231 |
Q |
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| T |
16468706 |
actggattttgtattgaggacaagattgtatgtgagaatgtgtagatgtt |
16468755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 16489645 - 16489612
Alignment:
| Q |
17 |
tcaaaagactccaacattgctcctatccatagtg |
50 |
Q |
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| T |
16489645 |
tcaaaagactccaacattgctcctatcaatagtg |
16489612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 17354456 - 17354538
Alignment:
| Q |
167 |
aatcaaaaatttatcattggattttgtctcaaggacaagattgtgtgtgagaatgtgtagatgttcttacttttatttttaat |
249 |
Q |
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| T |
17354456 |
aatcaaaaacttcttaatggattttgtctcaaggacaagattgagtgcgagaatgtgtagatggtcttacttctatttttaat |
17354538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 44410914 - 44410991
Alignment:
| Q |
193 |
tctcaaggacaagattgtgtgtgagaatgtgtagatgttcttacttttatttttaat-aatccaaaacatcgattaaa |
269 |
Q |
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| T |
44410914 |
tctcaagtacaagtttgtgtatgagaatgtgtaaatgatcttaccttaatttttaatgaatctaaaacattgattaaa |
44410991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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