View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1401_low_84 (Length: 219)

Name: NF1401_low_84
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1401_low_84
NF1401_low_84
[»] chr8 (1 HSPs)
chr8 (80-169)||(39974105-39974193)
[»] chr7 (1 HSPs)
chr7 (98-161)||(31515916-31515978)
[»] chr2 (1 HSPs)
chr2 (113-169)||(44439256-44439311)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 39974105 - 39974193
Alignment:
Q  80 tctcgaacaatattggtcttacctccagagtcaattctaacttgaaagctaaaaatggaagcttttgattttaaaattgattataacact 169  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39974105 tctcgagcaaaattggtcttacctccagagtcaattctaacttgaa-gctaaaaatggaagcttttgattttaaaattgattataacact 39974193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 31515916 - 31515978
Alignment:
Q  98 ttacctccagagtcaattctaacttgaaagctaaaaatggaagcttttgattttaaaattgatt 161  Q
    ||||||||||||||| |||||||||||| |||| | || |||||||||||||||||||||||||    
T  31515916 ttacctccagagtcacttctaacttgaa-gctatagattgaagcttttgattttaaaattgatt 31515978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 44439256 - 44439311
Alignment:
Q  113 attctaacttgaaagctaaaaatggaagcttttgattttaaaattgattataacact 169  Q
    ||||||||||||| ||||||| | | ||||||||||| ||||||||||| |||||||    
T  44439256 attctaacttgaa-gctaaaatttggagcttttgattctaaaattgattttaacact 44439311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University