View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_86 (Length: 218)
Name: NF1401_low_86
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 17190249 - 17190390
Alignment:
| Q |
1 |
aggagacatacaaagagtatatataatatatgctaaaaggactaaactactcttaatatata-ggatcaaataccattgtgccagaatttggtcaccaaa |
99 |
Q |
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| T |
17190249 |
aggagacatacaaagagtatatataatagatgctaaaaggaccaaactactcttaatatatagggatcaaataccattgtgccggaatttggtcaccaaa |
17190348 |
T |
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| Q |
100 |
ttattggggttattcggtccaagcactcttcgttgccatgttc |
142 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
17190349 |
ttatt-gggttattcggttcaagcactcttcgttgccatgttc |
17190390 |
T |
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