View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1401_low_9 (Length: 518)
Name: NF1401_low_9
Description: NF1401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1401_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 54276122 - 54276468
Alignment:
| Q |
7 |
gtgatatgaataaaaatgtccagaaatattgagatattttcttttgtgaaaagtgtggaggcaaaatgtatggggcatggggacttatttggggacgtag |
106 |
Q |
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| T |
54276122 |
gtgatacgaataaaaatgtccagaaatattgagatattttcttttgtgaaaagtgtggaggcaaaatgtatggggcatggggacttatttggggacgtag |
54276221 |
T |
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| Q |
107 |
agtagaattttcctttattatttcttctggaacatttgctatttgcaaggagatgcacatagaggtggaaaatgtgtcttgtgtttagaatgtctatgta |
206 |
Q |
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| T |
54276222 |
agtaaaattttcctttattatttcttctggaacatttgctatttgcaaggagatgcacatagaggtggaaaatgtgtcttgtgtttagaatgtctatgta |
54276321 |
T |
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| Q |
207 |
atgtgaagcttagaatgggatcttgcacacaaatactcaatcaccgttgctgtaattttggttttcagattgtttgcttgcttgttctccaattggatgt |
306 |
Q |
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| T |
54276322 |
atgtgaagcttagaatgggatcttgcacacaaatactcaatcaccgttgctgtaattttggttttcagattgtttgcttgcttgttctccaattggatat |
54276421 |
T |
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| Q |
307 |
caaaaacatacttaaagttaaagactactcaactcactataccatat |
353 |
Q |
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| T |
54276422 |
caaaaacatacttaaagttaaagactactcaactcactataccatat |
54276468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 517
Target Start/End: Complemental strand, 6966394 - 6966326
Alignment:
| Q |
449 |
ccttcttcagattttaaactctgaatatccgatatggttattacattctgaccttcgctctcttattct |
517 |
Q |
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| T |
6966394 |
ccttctgcagattttaaactatgaatatgcgatatggacattaaattctgacttttgctctcatattct |
6966326 |
T |
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