View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14020_high_2 (Length: 531)
Name: NF14020_high_2
Description: NF14020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14020_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 25788376 - 25788881
Alignment:
| Q |
18 |
actttattggtacacttccctctttcagaatgagtaaagaacttcgatatttatcgctgttgcacaataatttgtg-ggatgcggcttgaccaatggcac |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
25788376 |
actttattgctacacttccctctttcagaatgagtaaagaacttcgatatttatcgctgttgcacaataatttgacaggatgcggcttgaacaatggcac |
25788475 |
T |
|
| Q |
117 |
aatgcggcttgacatgattcagaggctgcagagtttaaatacattaggcctctcatacaacaatttgtcagttgatataactttcaatgaaaatcatgat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25788476 |
aatgcggcttgacatgattcagaggctgcagagtttaaatacattaggcctctcatacaacaatttgtcagttgatataactttcaatgaaaatcatgat |
25788575 |
T |
|
| Q |
217 |
ggcctttcatcctttccaaagatgaaatatctgttgttagcttcttgtaagttgagggaatttccaaagttcatgagaaatcaaccccatctaaaatggc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
25788576 |
ggcctttcatcctttccaaagatgaaatatctgttgttagcttcttgtaagttgatggagtttccaaagttcttgagaaatcaaccccatct-aaatggc |
25788674 |
T |
|
| Q |
317 |
ctagacttatccaacaactacattcatggagcaataccaatctggatattgagattcgactatctggtttatctgaatctttccaataatttcatctcaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25788675 |
ctagacttatccaacaactacattcatggagcaataccaaactggatattgagattcaactatctggtttatctgaatctttccaataatttcatcacag |
25788774 |
T |
|
| Q |
417 |
atttggaaagaccctttgatgatctcaattccaatctatatagccttgaccttcattccaataaacttgttggaaaaattcctactttcacgaaagatga |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
25788775 |
atttggaaagaccctttgatgatctcaattccaatctatatagccttgaccttcattccaataaacttgttggaaaaattcctactttcatgaaatatgc |
25788874 |
T |
|
| Q |
517 |
tgtccat |
523 |
Q |
| |
|
||||||| |
|
|
| T |
25788875 |
tgtccat |
25788881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University