View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14020_low_3 (Length: 386)
Name: NF14020_low_3
Description: NF14020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14020_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 25690398 - 25690520
Alignment:
| Q |
136 |
ccatctctagctttctctttctttgtcacatatcttggcaaagctccatcagatagtatatagttcccatcccacatcaaaccataatcatcacgtctct |
235 |
Q |
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| T |
25690398 |
ccatctctagctttctctttctttgtcacatatcttggcaaagctccatcagatagtatatagttcccatcccacatcaaaccataatcatcacgtctct |
25690497 |
T |
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| Q |
236 |
tctacatcaaaccattctatatc |
258 |
Q |
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| T |
25690498 |
tctacatcaaaccattctatatc |
25690520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 25690294 - 25690345
Alignment:
| Q |
32 |
actatctttaaattatctacatttcttgaaagttaacctaaaattctgcacc |
83 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25690294 |
actatctttaaattatctacatttcttgaaagataacctaaaattctgcacc |
25690345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 368
Target Start/End: Original strand, 25690587 - 25690628
Alignment:
| Q |
327 |
ctttccttgttacatggatctttcagaaacatcactctggtg |
368 |
Q |
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| T |
25690587 |
ctttctttgttacatggatctttcagaaacatcactctggtg |
25690628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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