View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14020_low_4 (Length: 381)
Name: NF14020_low_4
Description: NF14020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14020_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 855241 - 854919
Alignment:
| Q |
10 |
attatactcttcaaactccatggaactgcgttcaagcttatagaacagattaccacgaactctcagattgtctatctcttcaaaatcaagtttatcctca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
855241 |
attatactcttcaaactccatggaactgcgttcaagcttatagaacagattaccacgaactctcagattgtctatctcttcaaaatcaagttcatcctca |
855142 |
T |
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| Q |
110 |
agatcggaggaacaagcatcaaggggttcatcgatgacaagctgatcacaagaactactagctcctgctgtagccaaatcccctcctcgccaagcttgtg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
855141 |
agatcggaggaacaagcatcaaggggttcatcgatgacacactgatcacaagaactactagctcctgctgtagccaaatcccctcctcgccaagcttgtg |
855042 |
T |
|
| Q |
210 |
ccaccacagacgagaccccccaagcatcacggtccacaagctcgatgtcaaatccacttgaggggtgattggagttcgagaaaaacggtgaaagatgaag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
855041 |
ccaccacagacgagaccccccaagcatcacggtccacaagctcgatgtcaaatccacttgaggggtgattggagttcgagaaaaacggtgaaagatgaag |
854942 |
T |
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| Q |
310 |
gctactacaaggattataatcag |
332 |
Q |
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|||||||| ||||| |||||||| |
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| T |
854941 |
gctactactaggataataatcag |
854919 |
T |
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