View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14020_low_5 (Length: 371)

Name: NF14020_low_5
Description: NF14020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14020_low_5
NF14020_low_5
[»] chr8 (4 HSPs)
chr8 (181-371)||(33510517-33510705)
chr8 (6-87)||(35822488-35822570)
chr8 (38-87)||(23965418-23965467)
chr8 (6-144)||(33510018-33510161)
[»] chr4 (3 HSPs)
chr4 (6-87)||(38573016-38573098)
chr4 (6-87)||(37402039-37402121)
chr4 (6-87)||(53001842-53001929)
[»] chr5 (1 HSPs)
chr5 (6-87)||(13799069-13799151)
[»] chr3 (1 HSPs)
chr3 (6-87)||(40698287-40698369)
[»] chr1 (2 HSPs)
chr1 (6-87)||(1259153-1259235)
chr1 (6-87)||(8291996-8292078)
[»] chr2 (2 HSPs)
chr2 (6-87)||(18096317-18096399)
chr2 (5-87)||(37664669-37664751)
[»] chr7 (1 HSPs)
chr7 (11-85)||(15667352-15667427)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 181 - 371
Target Start/End: Original strand, 33510517 - 33510705
Alignment:
Q  181 atatagcgtcagacggctaatttagggggttaaaatttgagagtaaatatcagagaattgtaaaactggtcaaatatataagcctaaagagagagcaaaa 280  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||  |||||||    
T  33510517 atatagtgtcagacggctaatttagggggttaaaatttgagagtaaatatcagagaattgtaaaactggtcaaatatatgagcctgaagag--agcaaaa 33510614  T
Q  281 acaaacacgcgcaatgttattttcccataactttccatagcgatcttctgatctctccgtcgagagtggattgtaagttctttctgtcatt 371  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33510615 acaaacacgcgcaatgttattttcccagaactttccatagcgatcttctgatctctccgtcgagagtggattgtaagttctttctgtcatt 33510705  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 35822570 - 35822488
Alignment:
Q  6 tggacatcatcatgcttgcggatatct-tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttcct 87  Q
    |||| ||||||||||||||||||| || |||||||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  35822570 tggatatcatcatgcttgcggatacctctggggtatttaggcagcgaattggctagtttggttttcttgtcttttaatttcct 35822488  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 23965467 - 23965418
Alignment:
Q  38 tatttaggcagcggattgacgagtttggttttcttgtcttttaatttcct 87  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23965467 tatttaggcagcggattgactagtttggttttcttgtcttttaatttcct 23965418  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 33510018 - 33510161
Alignment:
Q  6 tggacatcatcatgcttgcggatatct-tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttcctagtcacnnnnnnnnn-- 102  Q
    |||| |||| |||||||||||||| || |||| | |||||||| ||||||| | |||||| |||||||||||||||||||||| ||||                
T  33510018 tggatatcaccatgcttgcggatacctctgggatgtttaggcaacggattggccagtttgattttcttgtcttttaatttcctcgtcataaaaaaaataa 33510117  T
Q  103 --ttacaaaaggatcacctattaatagatggagggagtagaagt 144  Q
      ||||||||| ||||||||||||| ||||||||||||||||||    
T  33510118 aattacaaaagtatcacctattaatggatggagggagtagaagt 33510161  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 38573098 - 38573016
Alignment:
Q  6 tggacatcatcatgcttgcggatatct-tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttcct 87  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38573098 tggatatcatcatgcttgcggatacctctggggtatttaggcagcggattgactagtttggttttcttgtcttttaatttcct 38573016  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 37402039 - 37402121
Alignment:
Q  6 tggacatcatcatgcttgcggatatct-tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttcct 87  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  37402039 tggatatcatcatgcttgcggatacctctggggtatttaggcagcggattggctagtttggttttcttgtcttttaatttcct 37402121  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 53001842 - 53001929
Alignment:
Q  6 tggacatcatcatgcttgcggatatct------tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttcct 87  Q
    |||| ||||||||||||||||||| ||      ||||||||||||||||| |||||   |||||||||||||||||||||||||||||    
T  53001842 tggatatcatcatgcttgcggatacctctggactggggtatttaggcagcagattggatagtttggttttcttgtcttttaatttcct 53001929  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 13799069 - 13799151
Alignment:
Q  6 tggacatcatcatgcttgcggatatct-tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttcct 87  Q
    |||| ||||||||||||||||||| || | ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  13799069 tggatatcatcatgcttgcggatacctcttgggtatttaggcagcggattggctagtttggttttcttgtcttttaatttcct 13799151  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 40698369 - 40698287
Alignment:
Q  6 tggacatcatcatgcttgcggatatct-tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttcct 87  Q
    |||| ||||||||||||||| ||| || |||||||||||||||||||||||   |||||| ||||||||||||||||||||||    
T  40698369 tggatatcatcatgcttgcgaatacctctggggtatttaggcagcggattgggtagtttgattttcttgtcttttaatttcct 40698287  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 1259235 - 1259153
Alignment:
Q  6 tggacatcatcatgcttgcggatatct-tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttcct 87  Q
    |||| ||||||||||||||||||| || ||||||||||| ||||| ||||| | ||||| |||||||||||||||||||||||    
T  1259235 tggatatcatcatgcttgcggatacctctggggtatttatgcagcagattggctagtttagttttcttgtcttttaatttcct 1259153  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 8292078 - 8291996
Alignment:
Q  6 tggacatcatcatgcttgcggatatct-tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttcct 87  Q
    |||| |||||| |||||| ||||| || | |||||||| |||||||||||| | |||||| ||||| ||||||||||||||||    
T  8292078 tggatatcatcctgcttgaggatacctctagggtattttggcagcggattggctagtttgtttttcctgtcttttaatttcct 8291996  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 18096317 - 18096399
Alignment:
Q  6 tggacatcatcatgcttgcggatatct-tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttcct 87  Q
    |||| ||||||||||||||||||| || ||| |||||| ||||||| |||| | |||||| ||||||||||||||||||||||    
T  18096317 tggatatcatcatgcttgcggatacctctggagtatttgggcagcgaattggctagtttgattttcttgtcttttaatttcct 18096399  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 37664751 - 37664669
Alignment:
Q  5 atggacatcatcatgcttgcggatatct-tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttcct 87  Q
    ||||| |||||| | ||| |||||| || ||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||    
T  37664751 atggatatcatcttacttacggatacctctggggtatttaggcagcagattgactagtttgtttttctt-tcttttaatttcct 37664669  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 15667427 - 15667352
Alignment:
Q  11 atcatcatgcttgcggatatct-tggggtatttaggcagcggattgacgagtttggttttcttgtcttttaatttc 85  Q
    |||||| |||||||||||| || ||  |||||||||||||| |||||| |||||| |||| |||||||||||||||    
T  15667427 atcatcctgcttgcggatacctctgatgtatttaggcagcgaattgactagtttgttttttttgtcttttaatttc 15667352  T

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