View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14020_low_8 (Length: 232)
Name: NF14020_low_8
Description: NF14020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14020_low_8 |
 | |
|
| [»] scaffold0370 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 38637999 - 38638162
Alignment:
| Q |
20 |
atgaaagaactagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38637999 |
atgaaagaactagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttga |
38638098 |
T |
|
| Q |
120 |
aattgaaaaaattgcatcacgaggaggtaatgtttttaaaaccataatctatgaatttgatata |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38638099 |
aattgaaaaaattgcatcacgaggaggtaatgtttttaaaaccataatctatgaatttgatata |
38638162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 38633954 - 38634082
Alignment:
| Q |
21 |
tgaaagaactagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttgaa |
120 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||| || |||||| |||||||| ||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
38633954 |
tgaaagaactagaagccataaatggagaattatattctttgaaagcaaaattaacagagaatcataagaaaaagggtgaagcatatcaaaggattttaaa |
38634053 |
T |
|
| Q |
121 |
attgaaaaaattgcatcacgaggaggtaa |
149 |
Q |
| |
|
||||||||| |||||||| |||||||||| |
|
|
| T |
38634054 |
attgaaaaacttgcatcatgaggaggtaa |
38634082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 38690649 - 38690730
Alignment:
| Q |
48 |
aattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttgaaattgaaaaa |
129 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38690649 |
aattatattctttgagtgcaaaattgatagagaagcataagaataaggatgaagcatatcaaaggattttcaaattgaaaaa |
38690730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 45335575 - 45335472
Alignment:
| Q |
45 |
gagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttgaaattgaaaaaattgcatcacgagga |
144 |
Q |
| |
|
||||| |||||| |||||||||||| |||| |||||| ||||||||||||| ||||||||||||||| ||||| |||| |||||| |||||||| ||||| |
|
|
| T |
45335575 |
gagaactatattatttgagagaaaagttgaaagagaatcataagaaaaagggtgaagcatatcaaagaattttaaaatcgaaaaatttgcatcatgagga |
45335476 |
T |
|
| Q |
145 |
ggta |
148 |
Q |
| |
|
|||| |
|
|
| T |
45335475 |
ggta |
45335472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 13070 - 13167
Alignment:
| Q |
30 |
tagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttgaaattgaaa |
127 |
Q |
| |
|
||||||| |||||| || |||||||||| |||||||||||||||| ||||| |||| |||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
13070 |
tagaagccataaacggaaaattatattcattgagagaaaaattgaatcagaagtataacaaaaagtatgaagcaaagcaaaggattttgaaattgaaa |
13167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University