View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14020_low_9 (Length: 222)
Name: NF14020_low_9
Description: NF14020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14020_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 34502595 - 34502490
Alignment:
| Q |
108 |
gaggtcggtgttagacaatgcacca---agcttaaccataaaattcgtgcattgattttcttcatgagctcttttaaaaaagaaaacaattttgtaccaa |
204 |
Q |
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| T |
34502595 |
gaggtcggtgttagacaatgcatcatcaaacttaaccataaaattcgcgcattgattttcttcacgagctcttttaaaaaagaaaacaattttgtaccaa |
34502496 |
T |
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| Q |
205 |
aaatat |
210 |
Q |
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|||||| |
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| T |
34502495 |
aaatat |
34502490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 34502641 - 34502592
Alignment:
| Q |
17 |
cagagagctaggctttaaaataaaaagttccagcaacatcactttggagg |
66 |
Q |
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| T |
34502641 |
cagagagctaggctctcaaataaaaagttccagcaacatcactttggagg |
34502592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 27155515 - 27155373
Alignment:
| Q |
17 |
cagagagctaggctttaaaataaaaagttccagcaacatcactttggaggaggaggaggacgagatccactggtggagtgtcgtgaagaaagaggtcggt |
116 |
Q |
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| T |
27155515 |
cagagagctaaactctcaaataaaaagttccagcaacatcactttggagaatgaggagga---gaaccgctggtggagtgtcgtggcgaaagaggtaggt |
27155419 |
T |
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| Q |
117 |
gttagacaatgcaccaagcttaaccataaaattcgtgcattgattt |
162 |
Q |
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| T |
27155418 |
gttcgacaaagcgccaagcctagccataaaatacgtgcattgattt |
27155373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 41834412 - 41834493
Alignment:
| Q |
17 |
cagagagctaggctttaaaataaaaagttccagcaacatcactttggaggaggaggaggacgagatccactggtggagtgtcgtg |
101 |
Q |
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| T |
41834412 |
cagagagctaagctctcaaataaaaggtttcggcaacatcactttgaaggagaaggag---gaaatccgctggtggagtgtcgtg |
41834493 |
T |
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