View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14021_high_1 (Length: 726)

Name: NF14021_high_1
Description: NF14021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14021_high_1
NF14021_high_1
[»] chr4 (12 HSPs)
chr4 (357-714)||(44879562-44879919)
chr4 (19-704)||(44861432-44862119)
chr4 (19-319)||(44879240-44879536)
chr4 (357-684)||(44848115-44848439)
chr4 (485-699)||(44836269-44836483)
chr4 (421-678)||(44897150-44897407)
chr4 (21-217)||(44896701-44896888)
chr4 (26-115)||(44835931-44836020)
chr4 (21-222)||(44847818-44848010)
chr4 (173-218)||(44836069-44836114)
chr4 (357-446)||(44836166-44836252)
chr4 (256-332)||(44896970-44897047)
[»] chr3 (3 HSPs)
chr3 (493-638)||(12927449-12927594)
chr3 (43-120)||(12927838-12927915)
chr3 (177-218)||(12927749-12927790)
[»] chr8 (2 HSPs)
chr8 (19-115)||(22637726-22637822)
chr8 (173-218)||(22637871-22637916)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 357 - 714
Target Start/End: Original strand, 44879562 - 44879919
Alignment:
Q  357 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatt 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879562 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatt 44879661  T
Q  457 tatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaa 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  44879662 tatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaa 44879761  T
Q  557 tgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatc 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879762 tgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatc 44879861  T
Q  657 cttaggtaagaatataaccatttcactctctgttctttgcattttctcaccctctctg 714  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  44879862 cttaggtaagaatttaaccatttcactctctgttctttgcattttctcaccctgtctg 44879919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 704
Target Start/End: Original strand, 44861432 - 44862119
Alignment:
Q  19 atctagcatcattctgcatacagatatcaaatgcctacctgcagtttctgcgtggacccggtaccaaaatattatttgagtttgtaaaggaactgccaaa 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  44861432 atctagcatcattctgcatacagatatcaaatgcctacttgcagtttctgcgtggacccggtaccaaaatattatttgagtttgtaaaggatatgccaaa 44861531  T
Q  119 acatgataccgtatttacggttggagggtatgacttagcttctatcatgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgca 218  Q
    || ||| ||||||||||   |||         | ||||||||| || |||| | |||||||||||| ||||||||||||||||||||||| |||||||||    
T  44861532 acctgagaccgtatttagaattg---------agttagcttctctcctgggcggtctgttctttacttgggtcgtcctgcaactttttccggtaagtgca 44861622  T
Q  219 gaaagaaatatctgaacagatagatatatgatcaagaaatacgtagctaatggccaattttgatttttcaaatagctgtgatattttttatgtccctaaa 318  Q
    ||||    |||||||||| |||    ||| | ||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| ||  ||||| ||||    
T  44861623 gaaa----tatctgaacaaata----tatcagcaagaaataagtagctaatggccaattttgagttttcaaatagctctgatattcttgctgtccataaa 44861714  T
Q  319 tcaactttatat--gtccatagccatgatgaaagtaaacttt----------------ttctgctcatggaacaatatatgacacgtattcaaagtcaat 400  Q
    ||| ||||||||  |||   ||||||||||||||||||||||                ||||||||||||||||||| |||||  ||||||||  ||||     
T  44861715 tcacctttatatatgtctgcagccatgatgaaagtaaactttcaattcaatttggattttctgctcatggaacaatacatgactagtattcaatttcaac 44861814  T
Q  401 aattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaacataattaagctctatgt--gcattttatgtag 498  Q
    |||||||||| |||||||||||| |||||||||||||||| |||||  ||||||||||||| |||||||  | ||| |||||| |  |||||||||| ||    
T  44861815 aattgtatctaacatccaataat-caaacacaacagaataaatgttttagtgtatttatctcttcaacacgagtaaactctatatatgcattttatgcag 44861913  T
Q  499 gttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatg 598  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44861914 gttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgacgggccatattggttgatttcatatg 44862013  T
Q  599 gttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataaccatttcactctctgttctttgcat 698  Q
    | ||||||||||| ||||| | |||||| || |||||||| ||||| |||||||||  |||||||||||||||||| |||||| ||||||||||| ||||    
T  44862014 gatattttcttgccttatctgtgatctacatattgtgtttcgtgatattcggctcagtcttaggtaagaatataactatttcattctctgttcttggcat 44862113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 44879240 - 44879536
Alignment:
Q  19 atctagcatcattctgcatacagatatcaaatgcctacctgcagtttctgcgtggacccggtaccaaaatattatttgagtttgtaaaggaactgccaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44879240 atctagcatcattctgcatacagatatcaaatgcctacctgcagtttctgcgtggacccggtaccaaaatcttatttgagtttgtaaaggaactgccaaa 44879339  T
Q  119 acatgataccgtatttacggttggagggtatgacttagcttctatcatgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879340 acatgataccgtatttacggttggagggtatgacttagcttctatcatgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgca 44879439  T
Q  219 gaaagaaatatctgaacagatagatatatgatcaagaaatacgtagctaatggccaattttgatttttcaaatagctgtgatattttttatgtccctaaa 318  Q
    |||||||||||||||||    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44879440 gaaagaaatatctgaac----agatatatgatcaagaaataagtagctaatggtcaattttgatttttcaaatagctgtgatattttttatgtccctaaa 44879535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 357 - 684
Target Start/End: Original strand, 44848115 - 44848439
Alignment:
Q  357 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgttcaagtgtatt 456  Q
    ||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||   |||||||| |||| |||||||||||||  | ||||||    
T  44848115 ttttctgctcatggaacaatacatgactcgtattcaaagtcaacaattgtatctaacatc---taatgcaagcacagcagaatatatgttgtaatgtatt 44848211  T
Q  457 tatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaa 556  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  44848212 tatctgttcaacatgattaacctccatgtgcattttatgtaggttattctgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaa 44848311  T
Q  557 tgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatc 656  Q
    ||||||||||||||||||||||||||||| ||||| |||| || ||||||||||| ||||| | |||||| || || |||||||||| ||| ||||||      
T  44848312 tgcatggtcttggtgacgggccatattggatgatttcatacggctattttcttgccttatcggtgatctacattttatgttttgtgacgtttggctcagt 44848411  T
Q  657 cttaggtaagaatataaccatttcactc 684  Q
    ||| ||||||||||||||||||| ||||    
T  44848412 ctttggtaagaatataaccatttaactc 44848439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 485 - 699
Target Start/End: Original strand, 44836269 - 44836483
Alignment:
Q  485 tgcattttatgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattg 584  Q
    |||||||||| |||||| || ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  44836269 tgcattttatataggttgttttgacatcactggtttatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgatgggccatattg 44836368  T
Q  585 gttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataaccatttcactc 684  Q
    | ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||  ||| |||||||||| ||  |||| ||||    
T  44836369 gatgattacatatggttattttcttgccttatcagcgatatacatgttgtgttttgtgatattcggctcagtcttgggtaagaataaaattatttgactc 44836468  T
Q  685 tctgttctttgcatt 699  Q
    ||| ||||| |||||    
T  44836469 tctattcttggcatt 44836483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 421 - 678
Target Start/End: Original strand, 44897150 - 44897407
Alignment:
Q  421 aatgcaaacacaacagaatatatgttcaagtgtatttatctgttcaacataattaagctctatgtgcattttatgtaggttattctgacatcactggttt 520  Q
    |||||||||||  || |||| |||||  ||||||||| ||| || || || | ||||||||||   ||||| ||||||||| | |||||||||||| |||    
T  44897150 aatgcaaacactgcataatagatgttttagtgtatttttctttttaatatgagtaagctctatacacatttaatgtaggttgtgctgacatcactgattt 44897249  T
Q  521 atgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagc 620  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||| |||||||     
T  44897250 atgagaagcaacaaaaattgagaatcatgatgaaaatgcatggtcttggtgatggaccatattggatgattacatatggttatttccttgccttatcagt 44897349  T
Q  621 gatctatatgttgtgttttgtgatgttcggctcatccttaggtaagaatataaccatt 678  Q
    |||||| |||||||| |||||||| || ||||||  | ||||||||||||||||||||    
T  44897350 gatctacatgttgtgctttgtgatatttggctcagtcctaggtaagaatataaccatt 44897407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 44896701 - 44896888
Alignment:
Q  21 ctagcatcattctgcatacagatatcaaatgcctacctgcagtttctgcgtggacccggtaccaaaatattatttgagtttgtaaaggaactgccaaaac 120  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||| ||||||||     
T  44896701 ctagcatcattatgcatgcagatatcaaatgcctacctgcagtttctgcgtggacttggtaccaaaatgttatttgagtttgtaaaggaaatgccaaaat 44896800  T
Q  121 atgataccgtatttacggttggagggtatgacttagcttctatcatgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgc 217  Q
     ||| |||  | |||         ||  |||  |||||||| || |||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  44896801 ctgagaccccactta---------ggattgagatagcttctctcctgggcgttctgttctttacatgggtcgttctgcaactttttccggtaagtgc 44896888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 44835931 - 44836020
Alignment:
Q  26 atcattctgcatacagatatcaaatgcctacctgcagtttctgcgtggacccggtaccaaaatattatttgagtttgtaaaggaactgcc 115  Q
    |||||| ||||| |||||||||||||| |||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||| ||||    
T  44835931 atcattatgcatgcagatatcaaatgcttacctgcagtttctgcttggacccagcaccaaaatcttatttgagtttgtaaaggaaatgcc 44836020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 44847818 - 44848010
Alignment:
Q  21 ctagcatcattctgcatacagatatcaaatgcctacctgcagtttctgcgtggacccggtaccaaaatattatttgagtttgtaaaggaactgccaaaac 120  Q
    |||| |||||| | ||| ||||||||||||||||| ||| ||||||||| |||||| | ||||||||| ||||||||||||||||||||| | |||||||    
T  44847818 ctaggatcattatccatgcagatatcaaatgcctatctgaagtttctgcttggacctgataccaaaatgttatttgagtttgtaaaggaaattccaaaac 44847917  T
Q  121 atgataccgtatttacggttggagggtatgacttagcttctatcatgggtgttctgttctttacatgggtcgtcctgcaactttttcctgtaagtgcaga 220  Q
     ||| |||  | ||| |  | ||||        |||||||| |  || ||| |||||||||||||||||||||||||| ||||||||| |||||||||||    
T  44847918 ctgagaccccaatta-gacttgagg--------tagcttctcttctgagtggtctgttctttacatgggtcgtcctgctactttttccggtaagtgcaga 44848008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 44836069 - 44836114
Alignment:
Q  173 tctgttctttacatgggtcgtcctgcaactttttcctgtaagtgca 218  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||    
T  44836069 tctgttctttacatgggttgtcctgcaactttttccagtaagtgca 44836114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 357 - 446
Target Start/End: Original strand, 44836166 - 44836252
Alignment:
Q  357 ttttctgctcatggaacaatatatgacacgtattcaaagtcaataattgtatctgacatccaataatgcaaacacaacagaatatatgtt 446  Q
    ||||||||||||||||||||| || || | | ||||||||||||||| ||| || |||||   ||||||| ||||||||||||| |||||    
T  44836166 ttttctgctcatggaacaatacattactcatcttcaaagtcaataatcgtacctaacatc---taatgcacacacaacagaatagatgtt 44836252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 44896970 - 44897047
Alignment:
Q  256 aatacgtagctaatggccaattttgatttttcaaatagctgtgatatt-ttttatgtccctaaatcaactttatatgt 332  Q
    |||| ||||||| ||||| |||||||||||| |||||||| ||||||| ||   ||||||||||||| ||||||||||    
T  44896970 aataggtagctattggccgattttgatttttgaaatagctttgatattcttacctgtccctaaatcagctttatatgt 44897047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 493 - 638
Target Start/End: Complemental strand, 12927594 - 12927449
Alignment:
Q  493 atgtaggttattctgacatcactggtttatgagaagcagcaaaaattaagaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgatta 592  Q
    ||||||||| | || |||||| | ||||| |||||||| ||||| || ||||| |||||||||||||||||||| ||||| |||||||||||| | |||     
T  12927594 atgtaggttgtcctcacatcattagtttacgagaagcaacaaaatttgagaatcatgatgaaaatgcatggtctcggtgatgggccatattggattattt 12927495  T
Q  593 catatggttattttcttgcattatcagcgatctatatgttgtgttt 638  Q
    | ||  |||||||||||||  |||||   ||||| |||||||||||    
T  12927494 cttacagttattttcttgccatatcaattatctacatgttgtgttt 12927449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 12927915 - 12927838
Alignment:
Q  43 tatcaaatgcctacctgcagtttctgcgtggacccggtaccaaaatattatttgagtttgtaaaggaactgccaaaac 120  Q
    |||||||| ||||||| |||||||||   ||| | ||||||||||| || |||||||||||||||||| |||||||||    
T  12927915 tatcaaattcctaccttcagtttctgttgggatctggtaccaaaatgttgtttgagtttgtaaaggaaatgccaaaac 12927838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 12927790 - 12927749
Alignment:
Q  177 ttctttacatgggtcgtcctgcaactttttcctgtaagtgca 218  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  12927790 ttctttacatgggtcatcttgcaactttttcctgtaagtgca 12927749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 22637726 - 22637822
Alignment:
Q  19 atctagcatcattctgcatacagatatcaaatgcctacctgcagtttctgcgtggacccggtaccaaaatattatttgagtttgtaaaggaactgcc 115  Q
    |||||| |||||  ||||| |||||||||||||| ||| ||||||||||||| |||  ||| ||||| || ||||||||||||||||||||| ||||    
T  22637726 atctaggatcatcatgcatgcagatatcaaatgcttacttgcagtttctgcgcggattcggcaccaagatcttatttgagtttgtaaaggaaatgcc 22637822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 22637871 - 22637916
Alignment:
Q  173 tctgttctttacatgggtcgtcctgcaactttttcctgtaagtgca 218  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||    
T  22637871 tctgttctttacatgggttgtcctgcaactttttccggtaagtgca 22637916  T

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