View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14021_high_2 (Length: 558)
Name: NF14021_high_2
Description: NF14021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14021_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 16 - 540
Target Start/End: Original strand, 28821559 - 28822102
Alignment:
| Q |
16 |
atagagcccaaaacctaatcaattgatatcctcttcatatcttcttttaaatttatttttaaaagctaaaacgactctagtttatggattcaaacttttg |
115 |
Q |
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| T |
28821559 |
atagagcccaaaacctaatcaattgatatcctcttcatatcttcttttaaatttatttttaaaagctaaaacgactctagtttatggattcaaacttttg |
28821658 |
T |
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| Q |
116 |
aattcttggaccttttgagttagcagtgcaaaaataataattaggaatttaaaatagtttagagtcggatttcagagattgtctgaaccccgactccgga |
215 |
Q |
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| T |
28821659 |
aattcttgaactttttgagttagcagtgcaaaaataataattaggaattcaaaatagttcagagtcggattttaaagattgtctgaaacccgactccaga |
28821758 |
T |
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| Q |
216 |
caaatgttagtatttttctcttgtgtgattcaattcctagtaaattaataacaatatgccggcacacataggctagttcaaagtatttatacagatttga |
315 |
Q |
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| T |
28821759 |
caaatgttagtatttttctcttgtgtgattcaattcctagt-aattaataacaatatggcggcacacataggctagttcaaagtatttatacagatttga |
28821857 |
T |
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| Q |
316 |
catgaccatggcacatagagacaaatttaagctttacactcttctaaattggcaactaatatcccggcacgtttgaaagataagactaacaagagt---- |
411 |
Q |
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| T |
28821858 |
catgaccatggcacatagagacaaatttaagctttatactcttctaaattggcaactaatatcccggcacgtgtgaaagataagactaataagagtatgc |
28821957 |
T |
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| Q |
412 |
--------------attagagtaatggcaacatcataatcatggaccaact--aaaaattaataataattagttatttgatgaattatttgaatgttcac |
495 |
Q |
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| T |
28821958 |
tgatgcacgagagaattagagtaatggcaacatcataatcatggaccaactaaaaaaattaataataattagttatttgatgaattatttgaatgttcac |
28822057 |
T |
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| Q |
496 |
gtatcatactaaattattgattaatatttaatactatgtgatttt |
540 |
Q |
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| T |
28822058 |
gtatcatactaaattattgattaatatttaataatatgtgatttt |
28822102 |
T |
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