View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14021_high_8 (Length: 340)
Name: NF14021_high_8
Description: NF14021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14021_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 18165275 - 18165598
Alignment:
| Q |
1 |
aattagatgcttacctacaatcttgagcagctcttccaatgaatcaggtaaaattatcaacttcccatgttgtccttgtaaggtggttctgtcttggcct |
100 |
Q |
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| T |
18165275 |
aattagatacttaccaacaatcttgagcagctcttccaatgaatcaggtaaaattatcaacttcccatgttgtccttgtaaggtggttctgtcttggcct |
18165374 |
T |
|
| Q |
101 |
acatagtgaatggtaactctcttatcaacaaaaatcggnnnnnnnctttcgatttgatggttacttgctcctaaagaaatttggtcactcctaacatgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18165375 |
acatagtgaatggtaactctcttatcaacaaaaatcggtttttttctttcgatttgatggttacttgctcctaaagaaatttggtcactcctaacatggc |
18165474 |
T |
|
| Q |
201 |
taagattatctgtctccataaagtctattatatgttcatctaatgtctgtccattttcatgactcttgttttgttgcttgtcttcttgatctttctgttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18165475 |
taagattatctgtctccataaagtctattatatgttcatctaatgtctgtccattttcatgactcttgttttgttgcttgtcttcttgatctttctgttt |
18165574 |
T |
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| Q |
301 |
ccatctaacaggacttagcttctt |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
18165575 |
ccatctaacaggacttagcttctt |
18165598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 6385205 - 6385257
Alignment:
| Q |
7 |
atgcttacctacaatcttgagcagctcttccaatgaatcaggtaaaattatca |
59 |
Q |
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||||||||| |||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
6385205 |
atgcttaccagcaattttgagcagctcttctaatgaatcaggtaggattatca |
6385257 |
T |
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