View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14021_high_9 (Length: 242)
Name: NF14021_high_9
Description: NF14021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14021_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 7032913 - 7033106
Alignment:
| Q |
30 |
ggaaagaaagccaaacaggtatagttcttttgtattaatgaatttttagttgattttatgagattgttgaacttcatagaactacaatatttaattcgaa |
129 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7032913 |
ggaaagaatgccaaacaggtataattcttttgtattaatgaatttttagttgattttatgagattgttgaacttgatagaactacaatatttaattcgaa |
7033012 |
T |
|
| Q |
130 |
tccaatgaagtgtttataagtgagagagtttacctttcaagccatttttgtatttaattggcttgcttgagcttatctaataaaataaatacct |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
7033013 |
tccaatgaagtgtttataagtgagagagtttcccttacaagccatttttgtatttaattggcttgcatgagcttatctaatgagataaatacct |
7033106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 7043330 - 7043533
Alignment:
| Q |
20 |
agcaggaacaggaaagaaagccaaacaggtatagttcttttgtattaatgaatttttagttgattttatgagattgttgaacttcatagaactacaatat |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||| |
|
|
| T |
7043330 |
agcaggaactggaaagaaagccaaacaggtataattcttctgtattaatgaatttttagttgattttatgagattgttgaacatgataaaattacaatat |
7043429 |
T |
|
| Q |
120 |
ttaattcgaatccaatgaagtgtttataagtgagagagtttacctttcaagccatttttgtatttaattggcttgcttgagcttatctaataaaataaat |
219 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
7043430 |
ttaattcaaatccaatgaagtgtttataagtgagagagtttacgttacaagccatttttgtatttaattggcttgcttgagcttatctaatgagataaat |
7043529 |
T |
|
| Q |
220 |
acct |
223 |
Q |
| |
|
|||| |
|
|
| T |
7043530 |
acct |
7043533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 7035170 - 7035371
Alignment:
| Q |
22 |
caggaacaggaaagaaagccaaacaggtatagttcttttgtattaatgaatttttagttgattttatgagattgttgaacttcatagaactacaatattt |
121 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7035170 |
caggaactggaaagaatgccaaacaggtataattcttttgtagtaatgaatttttagttgattttatgagattgttgaacttcatagaactacagtattt |
7035269 |
T |
|
| Q |
122 |
aattcgaatccaatgaagtgtt--tataagtgagagagtttacctttcaagccatttttgtatttaattggcttgcttgagcttatctaataaaataaat |
219 |
Q |
| |
|
|||| ||||||||| ||||||| |||||| || ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
7035270 |
aattggaatccaatcaagtgtttatataagcaagggagcttaccttacaagccatttttgtatttaattggcttatttgagcttatctaatgagataaat |
7035369 |
T |
|
| Q |
220 |
ac |
221 |
Q |
| |
|
|| |
|
|
| T |
7035370 |
ac |
7035371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University