View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14021_low_11 (Length: 220)
Name: NF14021_low_11
Description: NF14021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14021_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 4144719 - 4144902
Alignment:
| Q |
20 |
atcaggaggtttcatattatgatgcaccaaaaatgcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgtt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4144719 |
atcaggaggtttcatattatgatgcaccaaaaatgcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgtt |
4144818 |
T |
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| Q |
120 |
ctcacacaaccattagtccaatttcctaaactccactccaccgaattctttggctgaaacccatcaaaacaactacaaattggt |
203 |
Q |
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| T |
4144819 |
ctcacacaaccattagtccaatttcctaaactccactccaccgaattctttggctgaaacccatcaaaacaactacaaattggt |
4144902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 4152722 - 4152904
Alignment:
| Q |
20 |
atcaggaggtttcatattatgatgcaccaaaaatgcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgtt |
119 |
Q |
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||||||||||||||||||||||| |||| |||| |||||||||| |||| | |||||||||||||||||||||||||||| ||||||| ||||||| | |
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| T |
4152722 |
atcaggaggtttcatattatgatacaccttaaatccatcttgtttaactatacttgatccattcttcaccatctcacactttaagttcattccttctttc |
4152821 |
T |
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| Q |
120 |
ctcacacaaccattagtccaatttcctaaactccactccaccgaattctttggctgaaacccatcaaaacaactacaaattgg |
202 |
Q |
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| T |
4152822 |
ctcacacaaccattagtccaattgcctaaactccattccacagaattctttggctcaaacccatcaaaacaactacaaattgg |
4152904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 4123372 - 4123554
Alignment:
| Q |
20 |
atcaggaggtttcatattatgatgcaccaaaaatgcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgtt |
119 |
Q |
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||||||| |||||||||||||| |||| |||| ||||||| || |||| | |||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
4123372 |
atcaggaactttcatattatgatacaccttaaatccatcttgcttaactacagttgatccattcttcaccatctcacacttcaagttcaatccctctttc |
4123471 |
T |
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| Q |
120 |
ctcacacaaccattagtccaatttcctaaactccactccaccgaattctttggctgaaacccatcaaaacaactacaaattgg |
202 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||| |
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| T |
4123472 |
ctcacacaaccattagtccaatttcctaaactccattccacagaattctttgcctcaaacccatcaaaacaactacaaattgg |
4123554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 4163072 - 4163251
Alignment:
| Q |
20 |
atcaggaggtttcatattatgatgcaccaaaaatgcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgtt |
119 |
Q |
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||||||||||||| |||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
4163072 |
atcaggaggtttcgtattgggatgcaccaaaaatttatcttgtttaactacgcttgatccattcttcaccatctcacacttcaagttcattccttctttc |
4163171 |
T |
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| Q |
120 |
ctcacacaaccattagtccaatttcctaaactccactccaccgaattctttggctgaaacccatcaaaacaactacaaat |
199 |
Q |
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||||||||||||||||||||||| | | |||||||||||||| |||||||||||| |||||| | ||||||||||||||| |
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| T |
4163172 |
ctcacacaaccattagtccaattccttgaactccactccaccaaattctttggctcaaaccctttaaaacaactacaaat |
4163251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 4133914 - 4134093
Alignment:
| Q |
20 |
atcaggaggtttcatattatgatgcaccaaaaatgcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgtt |
119 |
Q |
| |
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||||||| ||||||||| ||| ||||||||| |||||||||| | | ||||||||| |||||| |||||||||||||||||||| |||| |||| |
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| T |
4133914 |
atcaggaactttcatattccgattcaccaaaaaaccatcttgtttaaattcatttgatccggtcttcaacatctcacacttcaagttcattcctgctgtc |
4134013 |
T |
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| Q |
120 |
ctcacacaaccattagtccaatttcctaaactccactccaccgaattctttggctgaaacccatcaaaacaactacaaat |
199 |
Q |
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||||||||||||||||||||||| | | ||||||| |||||| |||||||||||| |||||| | ||||||||||||||| |
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| T |
4134014 |
ctcacacaaccattagtccaattccttgaactccattccaccaaattctttggctcaaaccctttaaaacaactacaaat |
4134093 |
T |
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