View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14021_low_12 (Length: 216)
Name: NF14021_low_12
Description: NF14021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14021_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 24676846 - 24676979
Alignment:
| Q |
83 |
ccctctttgccctaaaagtcgttgacaaaacctccatccacgccaaacttgacgccgaacgccgcgcccgatgggaaatccaagtcctctccaccctctc |
182 |
Q |
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| T |
24676846 |
ccctctttgccctaaaagtcgttgacaaaacctccatccacgccaaacttgacgccgaacgccgcgcccgatgggaaatccaagtcctctccaccctctc |
24676945 |
T |
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| Q |
183 |
ccaccctttcctcccttcaatccttggtacatat |
216 |
Q |
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| T |
24676946 |
ccaccctttcctcccttcaatccttggtacatat |
24676979 |
T |
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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 54075539 - 54075477
Alignment:
| Q |
25 |
ccattatcatacaatattaaaatttccactcccactttttaatgatacacaacccattccctc |
87 |
Q |
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| T |
54075539 |
ccattatcatacaatatgaaattttccactcccacttttgaatgatacacaacccattccctc |
54075477 |
T |
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