View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14021_low_4 (Length: 428)
Name: NF14021_low_4
Description: NF14021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14021_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 37602998 - 37602584
Alignment:
| Q |
1 |
tccttgaagctctagagattaatgctctcagaaaccatgaagtgagtctttggtttgtggcacctaatggtgaagcaacgttgtttaagacccacataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37602998 |
tccttgaagctctagagattaatgctcttagaaaccaggaagtgagtctttggttagtgtcacctaatggtgaagcaacgttgtttaagacccacataac |
37602899 |
T |
|
| Q |
101 |
ttgttgagctaaggttatatcattgctttccaaagcacttgcacaatgaagtaagagcttttcaatacatgctccatctaagcttccaagacaacctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37602898 |
ttgttgagctaaggttatatcattgctttccaaagcacttgcacaatgaagtaagagcttttcaatacatgctccatctaagcttccaagacaacctttg |
37602799 |
T |
|
| Q |
201 |
agttcttctggttcaggaagaggaggagtgttttggtgtgtgttgaaaagtgttggattttgaaaggaaatggatgttgcttttaactcagctttcatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37602798 |
agttcttctggttcaggaagaggaggagtgttttggtgtgtgttgaaaagtgttggattttgaaaggaaatggatgttgcttttaactcagctttcatgt |
37602699 |
T |
|
| Q |
301 |
ggacgtgcatggttgaaggagattggaaaaatatagctaggttttatatggagatatgatataggttagaaaaacagcatgaaagagaggttgcagctag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37602698 |
ggacgtgcatggttgaaggagattggaaaaatatagctaggttttatatggagatatgatatagggtagaaaaacagcatgaaagagaggttgcagctag |
37602599 |
T |
|
| Q |
401 |
ttactatgtgagaat |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37602598 |
ttactatgtgagaat |
37602584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University