View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14021_low_5 (Length: 395)
Name: NF14021_low_5
Description: NF14021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14021_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 53514449 - 53514077
Alignment:
| Q |
12 |
agaatattgaacggagaattgctgatattacctccataccaataggtatgagtatttgtgtgatatctatgtctacctgtttgcctctttctcttcnnnn |
111 |
Q |
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| T |
53514449 |
agaatattgaacggagaattgctgatattacctccgtaccaataggtatgagtatttgtgtgatatctatgtctacctgtttgcctctttctcttcattt |
53514350 |
T |
|
| Q |
112 |
nnnnnnn---gttgctgcacatatattgaagtattgtgcataatacaccaaacttgttgcacatatacttaagtcttaggaccttagtgggaaacatggg |
208 |
Q |
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| T |
53514349 |
tttttctcttgttgctgcacatatattgaagtattgtgcataatacaccaaacttgttgcacatatacttatgtcttaggaccttagtgggaaacatggg |
53514250 |
T |
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| Q |
209 |
acacattattttttctaattaagtggcagtctatctcaatgtgtcggtagatggtcctctcgtggaacagtaagtttaaggtgatttgcatgcatcttga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53514249 |
acacattattttttctaattaagtggcagtctatctcaatgtgtcggtagatggtcctctcgtggaacagtaagtttaaggtgatttgcatgcatcttga |
53514150 |
T |
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| Q |
309 |
ttgtcacaaacgagtgtccttttcttaatcatcccaaatctgaactcttgaaaccgttgcttaatgttgtttt |
381 |
Q |
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| T |
53514149 |
ttgtcacaaacgagtgtccttttcttaatcatcccaaatctgaactcttgaaaccgttgcttaatattgtttt |
53514077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 53510800 - 53510427
Alignment:
| Q |
12 |
agaatattgaacggagaattgctgatattacctccataccaataggtatgagtattt-gtgtgatatctatgtctacctgtttgc--ctctt--tctctt |
106 |
Q |
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| T |
53510800 |
agaatattgaacagagaattgctgatattacctccataccagtaggtatgagttttttgtgtgatatctatgtctaccagtttgtttctcttcatctctt |
53510701 |
T |
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| Q |
107 |
cnnnnnnnnnnngttgctgcacatatattgaagtattgtgcataatacaccaaacttgttgcacatatacttaagtcttaggaccttagtgggaaacatg |
206 |
Q |
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||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
53510700 |
-gatctttttttgttgctgcatatatagagaagtattgtgcataatacgccaaacttgttgcacatatacttaagtcttaagaccttagttagaaacatt |
53510602 |
T |
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| Q |
207 |
ggacacattattttttctaattaagtggcagtctatctcaatgtgtcggtagatggtcctctcgtggaacagtaagtttaaggtgatttgcatgcatctt |
306 |
Q |
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| T |
53510601 |
ggacacattattctttctaattaagtggcagtctatctcaatgtgtcggtagatggtcctctcgtgaaacagtaaatttaaggtgatttgcatgcaactt |
53510502 |
T |
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| Q |
307 |
gattgtcacaaacgagtgtccttttcttaatcatcccaaatctgaactcttgaaaccgttgcttaatgttgtttt |
381 |
Q |
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| T |
53510501 |
gcttgtcacaaacgagtgtctttttcttaatcatcccaaatctgaactctttaaaccgttgcttaatgttgtttt |
53510427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 220 - 371
Target Start/End: Complemental strand, 53524652 - 53524499
Alignment:
| Q |
220 |
tttctaattaagtggcagtctatctcaatgtgtcggtagatggtcctctcgtggaacagtaagtttaaggtgatttgc-atgcatcttgattgtcacaaa |
318 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||| |||||||| || ||||| ||||||||||| ||| ||||| |||||||||||||| |
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| T |
53524652 |
tttctaattaagtggcagtctacctcaatgcgtcggtagatggttctctcgtgaaaaagtaaatttaaggtgatgtgcaatgcaatttgattgtcacaaa |
53524553 |
T |
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| Q |
319 |
cgagtgtc-cttttcttaatcatcccaaatctgaactcttgaaaccgttgctta |
371 |
Q |
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||||||| ||||||||||||||||| ||||||| ||||||||||||| |||| |
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| T |
53524552 |
tgagtgtcttttttcttaatcatcccatatctgaattcttgaaaccgtttctta |
53524499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 53524915 - 53524820
Alignment:
| Q |
12 |
agaatattgaacggagaattgctgatattacctccataccaataggtatgagtatttgtgtgatatctatgtctacctgtttgcctctttctcttc |
107 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||| || |||||||||||||| |||| |
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| T |
53524915 |
agaatgttgaacggagaattgctgatattacctccataccaataggtatgagtttttgtgtaatacctgtgtacacatgtttgcctctttcccttc |
53524820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 213 - 326
Target Start/End: Complemental strand, 53548273 - 53548158
Alignment:
| Q |
213 |
attattttttctaattaagtggcagtctatctcaatgtgtcggtagatggtcctctcgtggaacagtaagtttaaggtgatttgca-tgcatc-ttgatt |
310 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||| ||||||||||| |||| |||| | |||||| |
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| T |
53548273 |
attattctttctaattaagtgacagtctatctcaatgtgtcggtagttggtcctctcatgaaacagtaaatttaaggtgatgtgcagtgcaactttgatt |
53548174 |
T |
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| Q |
311 |
gtcacaaacgagtgtc |
326 |
Q |
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||||||| ||||||| |
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| T |
53548173 |
atcacaaatgagtgtc |
53548158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 53548492 - 53548403
Alignment:
| Q |
12 |
agaatattgaacggagaattgctgatattacctccataccaataggtatgagtatttgtgtgatatctatgtctacctgtttgcctctttc |
102 |
Q |
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||||||||||| |||||||||||||| |||||| ||||||| ||||||||||| |||||| | || ||||||||||||| ||||||||||| |
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| T |
53548492 |
agaatattgaaaggagaattgctgattttaccttcataccagtaggtatgagtttttgtgcg-taactatgtctacctgcttgcctctttc |
53548403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 53524798 - 53524743
Alignment:
| Q |
119 |
gttgctgcacatatattgaagtattgtgcataatacaccaaacttgttgcacatat |
174 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
53524798 |
gttgttgcacatatattgaagtattgtgcataatgcaccaaatttattgcacatat |
53524743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 20197081 - 20197015
Alignment:
| Q |
10 |
caagaatattgaacggagaattgctgatattacctccataccaataggtatgagtatttgtgtgata |
76 |
Q |
| |
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|||||||||||| | ||||||| ||||||||| |||||||||| |||||||||| ||||||||||| |
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| T |
20197081 |
caagaatattgagcagagaattcctgatattatctccataccagtaggtatgagattttgtgtgata |
20197015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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