View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14021_low_7 (Length: 380)
Name: NF14021_low_7
Description: NF14021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14021_low_7 |
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| [»] scaffold0187 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 362
Target Start/End: Complemental strand, 18165263 - 18164910
Alignment:
| Q |
8 |
caaatactttttggtaaataatgtcggtataggtaga-gtttcatgcatgtttgaattggcattgagattgactaaatcacggtgagctacctcgatttt |
106 |
Q |
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|||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18165263 |
caaatactctttggtaaataatgtcggtata--taggtgtttcatgcatgtttgaattggcattgagattgacaaaatcacggtgagctacctcgatttt |
18165166 |
T |
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| Q |
107 |
gacaaaagctacaatttgatggttcaacaaaatcacaatggcaccgtaattttgccaaactcactataaatttgaacatatacttacagaacgttttcca |
206 |
Q |
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| T |
18165165 |
gacaaaagctaaaatttgatggttcaacaaaatcacaatggcaccgtaattttgccaaactcactataaatttgaacatatacttacagaacgttttcca |
18165066 |
T |
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| Q |
207 |
cggtcaactaattatatcttttagcatgatgtcactctttgatgttcatattaaatatttatatggtgaaatataatttgataaaaatgtaaaacttttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18165065 |
cggtcaactaattatatcttttagcatgatgtcactctttgatgttcatattaaatatttatatggtgaaatataattcgataaaaatgtaaaacttttt |
18164966 |
T |
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| Q |
307 |
taagtaatgtgtgtgcatagtcattgaggggtaaccttggcgcaaccggtgaagtt |
362 |
Q |
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| T |
18164965 |
taagtaatgtgtgtgcatggtcattgaggggtaatcttggcgcaaccggtgaagtt |
18164910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 3520919 - 3520988
Alignment:
| Q |
52 |
gcatgtttgaattggcattgagattgactaaatcacggtgagctacctcgattttgacaaaagctacaat |
121 |
Q |
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| T |
3520919 |
gcatgtttgtattggcggtaagattggttaaatcacgatgaactacctcgattttgacaaaagctacaat |
3520988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 362
Target Start/End: Original strand, 8897 - 8929
Alignment:
| Q |
330 |
ttgaggggtaaccttggcgcaaccggtgaagtt |
362 |
Q |
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| T |
8897 |
ttgaggggtaaccttggcgcaaccggtgaagtt |
8929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 362
Target Start/End: Original strand, 19225 - 19257
Alignment:
| Q |
330 |
ttgaggggtaaccttggcgcaaccggtgaagtt |
362 |
Q |
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| T |
19225 |
ttgaggggtaaccttggcgcaaccggtgaagtt |
19257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 32156450 - 32156364
Alignment:
| Q |
86 |
acggtgagctacctcgattttgacaaaagctacaatttgatggttcaacaaaatcacaatggcaccgtaattttgccaaactcacta |
172 |
Q |
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| T |
32156450 |
acggtgagctaccacaattttgacaaaaactatattttggatattcaacaaaatcacaatgccaatgtgattttgcctaactcacta |
32156364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 6215394 - 6215448
Alignment:
| Q |
132 |
aacaaaatcacaatggcaccgtaattttgccaaactcactataaatttgaacata |
186 |
Q |
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| T |
6215394 |
aacaaaatcacagtgtcaccgtaatttggctaaactcactatcaattcgaacata |
6215448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 3208366 - 3208296
Alignment:
| Q |
49 |
catgcatgtttgaattggcattgagattgactaaatcacggtgagctacctcgattttgacaaaagctaca |
119 |
Q |
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| T |
3208366 |
catgcatgtttgattttgcggtgggattgtcagaatcacggtgagccaccttgattttgacaaaagctaca |
3208296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 25635667 - 25635707
Alignment:
| Q |
129 |
ttcaacaaaatcacaatggcaccgtaattttgccaaactca |
169 |
Q |
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| T |
25635667 |
ttcaacagaatcacaatgtcaccgtgattttgccaaactca |
25635707 |
T |
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